G505377 (LOC106605384)


Basic Information

Item Value
gene id G505377
gene name LOC106605384
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39464768 ~ 39484669 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU573790
CTGCATGTGTATCAGTACCTTAGCTGACAGGATGTTTTTGACCTCTGTGTCCTCTGCACTGTGTGGAGCAGGGATATCAGGGTTGCTGCTGCTGCGGAGCCGAGACTGCAGTAACATGGCTCCTACTGTGGAGGCCGAGGCCCGCCCCATAGTACTGTAGCGGCCCTCAGTGGGAGGTAACACCCCATCTGGACCTGGACACACAGGGGAGAGCCATGTCACTGGCATGATCTACCTCGTCACACCTCGCTTTACACACTGAACCTGCACACTGATCCTAAACACTAAACCTGCACACTGAACCTAAACCTACACACTGAACCTAAACCTACACACTGAACCTAAACCTACAGAGTGAACCTAAACACTAAACCTGCACACTGAACCTACACACTGAACCTAAACCTACACACTGAACCTAAACCTACACACTGAACCTAAACCTACACACTGAACCTAAACCTACACACTGAACCTAAACACTAAACCTGCACACTGAACCTAAACACTAAACCTGCACACTGAACCTAAACACTAAACCTGTACACTAAACCTGCACACTGAACCTAAACCTACACACTGAACCTAAACACTAAACCTGCACACTGAACCTACACACTGAACCTACACACTGAACCTAAAGACTAAACCTGCACACTGAACCTGCACACTATACCTGCACACTAAACCTACACACTGAACCTGAACCTACACACTTAACCTACACATCTATACGGGGCTTGTGAAGTTTggaggtggggagtggagtggGAGGTTTATTGGGGGAGAGGGGGGCTGTGGGAGGGTCTCGAATGCTAGAGGGGCAGCTCTTGGGGGAACTGTGGGGGATCTTGGATGGTTGGTGGCCTGGCGGTTGGGAGGTTGGGCCTGTGGCCAAGAGGCGGGAGGTTATTCAAGTCCCCAATTATTTGACtttgtgggagatctgtcgatgtgccccTGGGTGGGAAGCTTGACCCTGGTTGCTCCTGTGGGTCGCTCTGGACGGGAGTGTCTGCtagatgactgaatgtaatgtaaatgttgagcggcttcactgcaggtAAGAGGAAGTAAGAATCAAGTGCGAGGAgggggtgctgtgggattatttaagatactctttgaagaggaagggtttcagatgttttcagacgatgggcagggactctgctgtcctagcttcagggggaagctggtcccaccattggggtgccaggacagagaagagtttgGACTCGGCTGAACTGGAGCTGCCCTCCCGTTGgtgtgggagggccaagagaccagaggtggcagaacggagttggggtgtagggtttgagaaTGAGCCTGAAGATAGGAAGTACCAGGGTCTTGTAGTGGATCCgagctttgactggaagccagtggagtgtgcggaggaccgggggtgacatgggagaatttgggaaggttgaacaccaggcgggGTGCAGCGTTCTGGATTAGATGCAGTGGTTTGATGGCACCGGCGAGGAGCCCaaccaacagcgagttgcagtagtccaggcGGGAGATGGTAAATGCCTGGATTAGGACCGGCGCCGCTTCCTGTGTGCGGCAGGGTtgtactctacagatgttgtagagcatgaacctgcgtagcaagtcactgctttgatgtttgtagAGAACGACAGGGTCACGCAAAGGTTCTTTGCATTCTGGGAGGGGGACACCATGGAGTTGTCAACTGTGATGAAGTTTTGGCAGTGCAGAGAGCCTCCAGGACACAAagaagagcagtctcggttgagtgacaCGTTTTGATGGTTAGGGTGAAGAAGATGGTTCTGAGAGAGATAGTGTGAGAGTCGGTCAGAGACAGCACGCataagtgttttggaaagaaaataaagaagGGCCTGTAGTTTTTGACATCAGAGGGTGTTGGTTTCCTGAGGAGGGGAGCGATTCTGGAaatgtttgagtcagtggtctgggatgagggaagtgagaaggtctccagagatggtcgagagaagggaggaggggatggggtcgagCGGGCAGGTTGTCAGGTGGCTGAACCTCACTAGtcgcaggatttcatctggagagagaggggagaaagaggtcaaggcgtagGGTAGTGGGAGTGGGACCAGTGGATTCAATAAGCTGAGTGAATGAAGAGCGGATGTCGACAATTTTCTTTTTAAAGTGGCTGACAAAGTCAtctgcagagagggaggaggtggggtggaggattaaggagggaggagaaggtggaaaaagtttcctagggttagaggcagacaCTTGAAATCTAGCGCAATAGAAAGTGCTTTtagcagcagatacagaggaagagaaggtagagaggagggagtgaaaggataATAGGTCCTCCAGAAGTGAAGTTCTCCTCCATTGCCTCgtaatgagtcactcagccacagagcaggaggggagggccgaGCCGGCCGGGAAGAAAGGGGAAAGGATAAAGTCATAAAGTCATAGCATGCGTAAAGGGAGGTTAGTAGGGTCGAAGAGGCAggaggatttagcagaagggagataTGATAGAAGAGGAaaagagtagagacagagagagagagagagagagagagacagagagactgagagacagagagagagagagagagagagagtgtgagagagagtgtgagagacagcgacagaagagagagaacctCAGTCACCAAACCCCTCGTTTCCAGATCGAGTCATATCAATTGTAATTGGTTAAACAAGCCGGACAGTATGTCATCCTGGGCTGTAACAGAGGGATGATTCATGGGCCAACAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106605384, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU573790 True 2796 lncRNA 0.51 3 39464768 39484669

Neighbor

gene id symbol gene type direction distance location
LOC110525923 NA coding upstream 59507 39402537 ~ 39405261 (+)
fancc fancc coding upstream 152670 39269915 ~ 39312098 (+)
trnaa-ugc-17 NA coding upstream 176106 39288589 ~ 39288662 (+)
ptch1 ptch1 coding upstream 229894 39155476 ~ 39234874 (+)
hsd17b3 hsd17b3 coding upstream 396378 39042158 ~ 39068390 (+)
cbwd cbwd1 coding downstream 37054 39521723 ~ 39526646 (+)
foxd5 LOC106584956 coding downstream 49267 39533936 ~ 39535789 (+)
pgm5 LOC106585157 coding downstream 51975 39536644 ~ 39583427 (+)
LOC110525927 smim15 coding downstream 189295 39673964 ~ 39680031 (+)
LOC110525928 LOC106585161 coding downstream 250034 39734703 ~ 39750180 (+)
G505363 NA non-coding upstream 31867 39432680 ~ 39432901 (+)
G505359 NA non-coding upstream 34736 39429805 ~ 39430032 (+)
G505356 NA non-coding upstream 37865 39426668 ~ 39426903 (+)
G505354 NA non-coding upstream 39611 39424799 ~ 39425157 (+)
G505349 NA non-coding upstream 45280 39419262 ~ 39419488 (+)
G505697 NA non-coding downstream 97342 39582011 ~ 39587770 (+)
G505795 NA non-coding downstream 182585 39667254 ~ 39667805 (+)
G505803 NA non-coding downstream 186484 39671153 ~ 39671452 (+)
G505827 NA non-coding downstream 231722 39716391 ~ 39717493 (+)
G505857 NA non-coding downstream 280299 39764968 ~ 39765533 (+)
G499111 NA other upstream 5313031 34151140 ~ 34151737 (+)
LOC110525816 LOC106585060 other upstream 5999713 33447246 ~ 33465055 (+)
c6h22orf39 cssa24h22orf39 other upstream 6144420 33317578 ~ 33320353 (+)
LOC110525799 LOC106585046 other upstream 6300507 33135282 ~ 33165186 (+)
G505988 NA other downstream 477983 39962652 ~ 39963098 (+)
G506095 atp5a1 other downstream 712131 40196800 ~ 40203886 (+)
LOC110525949 LOC106585178 other downstream 772398 40256994 ~ 40259050 (+)

Expression


Co-expression Network