G505984


Basic Information

Item Value
gene id G505984
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39958868 ~ 40010338 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU574443
TGTAAACAAGCCTTTATTAATTGAAAAAATGTCTTTCCTCTACCTCAGCTAAATTATGAGGAACATTTAAGGAAATCTCTTTTGATTTCTCTCTTACTATTCAACAAACATTTTGTCAAGTTACTGTATGTCGATATTATGACTTTGCTGTCAATGTGTGAAAATAATGTAAATGAATCCACAATTTATAAGAAAAATAGAAACTTTGATTCTTTGTTTTGACTCTTCAAGGGTGGAGGTGATAGTAAAACAAGTGCGTAATCTACAACCACCAGATCTACATGATCTCTGAAGTACATTCTCCAGGAAAGCTTTGCAACAACTTTTCAAATTGAATTGGTATAAAATGTGTTTTCCAGATATCAGTGGTTCTATTTTTCTACTCTAAACTtacatttttgtgtgtgttaacGTTGTATCAAAATACCTACTCGAGCAGTTATACAGACCACTGGCATTAGCTTGTGTGCCTGACTGTTTTTGCATTCAACACTGCATTGTTCCTTTGATCAGTTTTTGCAGATATACCTAAACACTTCTTGTGGCCCCTTTGTTGATCTGAAAGAATGGATGGCTGGGGGGCTTCCAGAGTTATTGGAGTTTCAAGAACCTGTCAGTTCTTTAaggggatactttgggatttatctacttccccagagtcagatgaactcgtggataccatttttatgtatctgtgtgcagtttgaaggaagttcttaacaattgctaactagctttagcgcaatgactggaagtctatgggtatctgctagcatctttctagttattgtgttaatgctagttagcattggcttgcgaaACTAACTCGAACTTCCTTCATACTTGACACAgcgacataaaaatgccttccacgagct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU574443 True 878 lncRNA 0.36 2 39958868 40010338

Neighbor

gene id symbol gene type direction distance location
LOC110525934 LOC106580580 coding upstream 37145 39916138 ~ 39921723 (+)
LOC110525933 LOC106585165 coding upstream 57343 39882777 ~ 39901525 (+)
LOC110525928 LOC106585161 coding upstream 208688 39734703 ~ 39750180 (+)
LOC110525927 smim15 coding upstream 280603 39673964 ~ 39680031 (+)
pgm5 LOC106585157 coding upstream 375441 39536644 ~ 39583427 (+)
LOC110525942 LOC106585173 coding downstream 136998 40147336 ~ 40154986 (+)
LOC118965025 NA coding downstream 149826 40160164 ~ 40165614 (+)
LOC110525943 NA coding downstream 161982 40172320 ~ 40178096 (+)
LOC110525945 LOC106585174 coding downstream 174833 40185171 ~ 40191808 (+)
LOC110525947 LOC106585175 coding downstream 194565 40204903 ~ 40215454 (+)
G505972 npc1l1 non-coding upstream 17113 39941163 ~ 39941755 (+)
G505962 NA non-coding upstream 33684 39924895 ~ 39925184 (+)
G505955 gk non-coding upstream 46943 39908373 ~ 39911925 (+)
G505882 NA non-coding upstream 93993 39790166 ~ 39864875 (+)
G505865 LOC106585162 non-coding upstream 182405 39772813 ~ 39776463 (+)
G506019 LOC106585169 non-coding downstream 11397 40021735 ~ 40026395 (+)
G506033 LOC106584485 non-coding downstream 39887 40050225 ~ 40050485 (+)
G506035 NA non-coding downstream 42120 40052458 ~ 40052693 (+)
G506038 NA non-coding downstream 45701 40056039 ~ 40056941 (+)
G506039 LOC108412098 non-coding downstream 51249 40061587 ~ 40062614 (+)
fancc fancc other upstream 646994 39269915 ~ 39312098 (+)
G499111 NA other upstream 5807131 34151140 ~ 34151737 (+)
LOC110525816 LOC106585060 other upstream 6493813 33447246 ~ 33465055 (+)
G506095 atp5a1 other downstream 186462 40196800 ~ 40203886 (+)
LOC110525949 LOC106585178 other downstream 246729 40256994 ~ 40259050 (+)
G506281 LOC106585187 other downstream 534525 40544863 ~ 40547513 (+)
G506285 NA other downstream 555729 40566067 ~ 40566429 (+)
fbxl17 fbxl17 other downstream 558388 40568637 ~ 40886427 (+)

Expression


Co-expression Network