G505997 (LOC106584939)


Basic Information

Item Value
gene id G505997
gene name LOC106584939
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39976466 ~ 39982658 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU574468
TGTGTAGACCTCTGTGGTAGTTGTAGGTGGTGGTGTGGTAGTTGtgggtggtagtgtggtagttgTAGGTGGTGGAGTTGTTGTAGGTGCTTCTGTCCGTGGCTCCTTTCCTTTGCCCTTCTTTGGCTTTTTGTCTGCTTTAGGCTTCTTGGTGGCCTTGGGCACTTTGGGCTCCTTGTTCTTCTTGTCTTTCTTGTCTTTCTTGGCCTTCTTTTTATTCCCTTTGCCCTCCTCTTCGGCTCTTCTGACCCTGGCTGGTAGGGCATCCTCCTCTGTGGCTCTCTTTTCCTTGCTAGTTTGGCTTTGTGTCTCTGTGAGTTCCTCTTCTTTAGCTGGTTCATTCTGGGACTCCTCTCCATATAgggcctccatccctctctcctctacagcCTGGCCTAAAGAGACAATGCCTCCTGCACTCTCCCCTGCTTTGGGCAGTAGCACACAGCATATGGCCAGCAGAACCAAACACACCACTGCAGTATGACCTCCCATCCTCCTTATTCTACCTGCCTCAGGATTCTACCTCAATGTTCCACTGAAAAGTTTCAGCTCAGTGTTCCGATTAAGTATTCCAGCTCTGATTTCCCAAAATCTTGCCAAAAGTTCCAGCTCAGAACGCTACTCAGAAATTCTACCGAAGTGTTCTATATCTGAATTCTACCCCAGAATTCTACCTCTCAGTTTTCTACTCTAGTGTTCCATGTCTTCTCTACGGTCAGGAAGATTCTGGAGCTCCAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU574468 True 741 lncRNA 0.48 2 39976466 39982658

Neighbor

gene id symbol gene type direction distance location
LOC110525934 LOC106580580 coding upstream 54743 39916138 ~ 39921723 (+)
LOC110525933 LOC106585165 coding upstream 74941 39882777 ~ 39901525 (+)
LOC110525928 LOC106585161 coding upstream 226286 39734703 ~ 39750180 (+)
LOC110525927 smim15 coding upstream 298201 39673964 ~ 39680031 (+)
pgm5 LOC106585157 coding upstream 393039 39536644 ~ 39583427 (+)
LOC110525942 LOC106585173 coding downstream 164678 40147336 ~ 40154986 (+)
LOC118965025 NA coding downstream 177506 40160164 ~ 40165614 (+)
LOC110525943 NA coding downstream 189662 40172320 ~ 40178096 (+)
LOC110525945 LOC106585174 coding downstream 202513 40185171 ~ 40191808 (+)
LOC110525947 LOC106585175 coding downstream 222245 40204903 ~ 40215454 (+)
G505972 npc1l1 non-coding upstream 34711 39941163 ~ 39941755 (+)
G505962 NA non-coding upstream 51282 39924895 ~ 39925184 (+)
G505955 gk non-coding upstream 64541 39908373 ~ 39911925 (+)
G505882 NA non-coding upstream 111591 39790166 ~ 39864875 (+)
G505865 LOC106585162 non-coding upstream 200003 39772813 ~ 39776463 (+)
G506019 LOC106585169 non-coding downstream 39077 40021735 ~ 40026395 (+)
G506033 LOC106584485 non-coding downstream 67567 40050225 ~ 40050485 (+)
G506035 NA non-coding downstream 69800 40052458 ~ 40052693 (+)
G506038 NA non-coding downstream 73381 40056039 ~ 40056941 (+)
G506039 LOC108412098 non-coding downstream 78929 40061587 ~ 40062614 (+)
G505988 NA other upstream 13368 39962652 ~ 39963098 (+)
fancc fancc other upstream 664592 39269915 ~ 39312098 (+)
G499111 NA other upstream 5824729 34151140 ~ 34151737 (+)
G506095 atp5a1 other downstream 214142 40196800 ~ 40203886 (+)
LOC110525949 LOC106585178 other downstream 274409 40256994 ~ 40259050 (+)
G506281 LOC106585187 other downstream 562205 40544863 ~ 40547513 (+)
G506285 NA other downstream 583409 40566067 ~ 40566429 (+)
fbxl17 fbxl17 other downstream 586068 40568637 ~ 40886427 (+)

Expression


Co-expression Network