G506039 (LOC108412098)


Basic Information

Item Value
gene id G506039
gene name LOC108412098
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40061587 ~ 40062614 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU574512
cgagagagagagagagagagagagagagagagagagagaataaagtgaaAGCTTGTGGACATGTATTGCGTGGTCATGTATCCAAATAATAGGAAGGGACTCACAACAAATCTGCTGTTGACCTTCTCTAGTATTTGTTTCTCATTAAGGGCCATggactctcctttcctcttcttaaTTCTCTTCTTCTCCAGCTTCTTGCAGGCATACATCTTCCCTGTGGCTCGCACCTGGCACGCACACACCTCTCCGAATCCTCCCTTCCCCAGTACTCGGTACTGTCGAAACGTGTCTTTAGTTATTGGCTGTCTGAAAACACATCTCATAGTAAATAACATAGTACCAGGCACAGAGCTAGAGAGTCTCTGCACATAGGGGGCAGGGTGCTCTCGAGGGGCGCTTCTGACCAAATCAATTCAATTCATAGCTGATACGGCCTATGATAAACGCAAATTAGGCATCATCACTAGGGTCGTTAACAGTTAGTctgcaaaacatgttttttaccTGTCACGGTTACCGGTCTAGCTATAGGTTAATTAGCATAACTCAATTGGAGCGTGTGTATTTTCATTCGTTTGTCATGCATCTTATTTTATGAGATGCGCACCACATACTAGAGCCCTGTACGGGCATCATTTTAAATTCCTACCAATATgcccctaccctacccaggcccGATCGCTTCTGACAAATTTAAGGCCCGGCCCGGAATAGAGAAGCAACTTCCTCCAGTAGTAAATCCGTTAGctgcttctctctgtccatcACTCGCTCCCTGCTCACTCTGCACGTGTTCTGCTCATGGTGGCTCCAAGTCTGTGAGTATCCATAGCAATGGCTCCACTTGGGCCGCAGTTCAGCCGTCAACGGATATTATTATCTCCAGTCTTATATTTGTCGAGGTTGAAGCGCTTCTGACACCATGTTGTGATCTT

Function

NR:

description
PREDICTED: G protein-coupled receptor kinase 5-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU574512 True 938 lncRNA 0.46 2 40061587 40062614

Neighbor

gene id symbol gene type direction distance location
LOC110525934 LOC106580580 coding upstream 139864 39916138 ~ 39921723 (+)
LOC110525933 LOC106585165 coding upstream 160062 39882777 ~ 39901525 (+)
LOC110525928 LOC106585161 coding upstream 311407 39734703 ~ 39750180 (+)
LOC110525927 smim15 coding upstream 383322 39673964 ~ 39680031 (+)
pgm5 LOC106585157 coding upstream 478160 39536644 ~ 39583427 (+)
LOC110525942 LOC106585173 coding downstream 84722 40147336 ~ 40154986 (+)
LOC118965025 NA coding downstream 97550 40160164 ~ 40165614 (+)
LOC110525943 NA coding downstream 109706 40172320 ~ 40178096 (+)
LOC110525945 LOC106585174 coding downstream 122557 40185171 ~ 40191808 (+)
LOC110525947 LOC106585175 coding downstream 142289 40204903 ~ 40215454 (+)
G506038 NA non-coding upstream 4646 40056039 ~ 40056941 (+)
G506035 NA non-coding upstream 8894 40052458 ~ 40052693 (+)
G506033 LOC106584485 non-coding upstream 11102 40050225 ~ 40050485 (+)
G506019 LOC106585169 non-coding upstream 35192 40021735 ~ 40026395 (+)
G505984 NA non-coding upstream 51249 39958868 ~ 40010338 (+)
G506112 NA non-coding downstream 103730 40166344 ~ 40166961 (+)
G506127 NA non-coding downstream 117757 40180371 ~ 40180617 (+)
G506129 NA non-coding downstream 119556 40182170 ~ 40182387 (+)
G506100 NA non-coding downstream 131218 40193832 ~ 40194236 (+)
G506096 NA non-coding downstream 131974 40194588 ~ 40196747 (+)
G505988 NA other upstream 98489 39962652 ~ 39963098 (+)
fancc fancc other upstream 749713 39269915 ~ 39312098 (+)
G499111 NA other upstream 5909850 34151140 ~ 34151737 (+)
G506095 atp5a1 other downstream 134186 40196800 ~ 40203886 (+)
LOC110525949 LOC106585178 other downstream 194453 40256994 ~ 40259050 (+)
G506281 LOC106585187 other downstream 482249 40544863 ~ 40547513 (+)
G506285 NA other downstream 503453 40566067 ~ 40566429 (+)
fbxl17 fbxl17 other downstream 506112 40568637 ~ 40886427 (+)

Expression


Co-expression Network