G506096


Basic Information

Item Value
gene id G506096
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40194588 ~ 40196747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU574579
cagttaacTTCCACTTGGTGTTCTCAAACTTGAAGATCTCATCTCTGTTCAGGTTGGACTCGCTCAGTTTCAATTTGTGATCAGACTCGTGTTTCACTTTGATAAATGTAACCATATCTTTATCACTGAGCTTGTTCTGATCCTAGCCACTCTCACCAGGCTACGAAAGAGACTTTTGACCCAGACATGCCTTCATTGACAGAAGCCCCATTAATACTCTTGACACACTGCGCTCACGCTTGTCAAGCAATGCACTGTGTTCAAATGCATCAACTGGGAAAATGCTGTTAAATACACTAATTGTATATAACAGTTTAGTGAAAAGAAACTACTAGAAATAACATGTAATTCAGATGACATTGACCGCATGCGAGCAGACAACCAGATCAACTACCACACTCTAGTGGACAAACTAACATTGCAGCGGGGAGGTAAATGAATGACCTTATGTCTGACTGTAGCAAAGGATTTGACAAGTAAAACTCCAAAATGAATAACCCATCATTTTCAGAGTTCGGTCTTACATGAAATGCAAGATCAAATTGTATTACTAAGAGTAATAACATTTTGACAATCATGTGCCGACTTACTGGGGTTGCCATTGTTTCAATACGAAAAAGGGCTGTATTGGTCCAGATGTATGGGTGAGAGGCTGTATTAGATATACCTCTCGTAATCATGTCTGTTTTACAATAAGTGTGGATACTTTCATTTCCATCATATCAAATGAGTTACACCCACCATTCCAGCTTTACAGAAACTGGACACTCATGAGCTCTGCCGGCGACAGATATTTCCCAATAGACATTCCAACAGTTGCTAAACACAATCAATGCCATACATTTCTTTCCAACAATGAAATGCTTTATGGTTGATTGTGCTACATTTCTTGTGATGCAAAAGTGACGATTTTGATATCCTGTAATTGAGACCACCCAAATTTGTTTATTTTAACTCATGAAATTCATGAACAAAGTCACAAGATATTTAGAGTTGTTTGAGTAAATAAAGACCCACAGTGGGCGAAACAGTTACTGCATTAGAACAGAGCGCAGGAATTATTTTTCACATGACATTTTATTCCCTTCAACTGGATAATCTGCTGGACCGGCACAGTCTACCACGGCAACAGTCAAATTTTACCACAGCTCTCTAGGGTTGTACAATTTTATTTCTTCTTAGGAGAAATCTGTACATTGAGGTTCTGGCCTTCAGTGTTTCACATACATATAATATTAGGACAATGCGACAGACCGTAAGCACACTGAAGGATCAGGAGCAGTTTCGCTCTTTACTCAAAGCTGGACAGGAAGGTCAACACAATCTCCTTCAGTTTGGCGTCAGCTGTCGGTGAGATCATACCATCGGTCTGATGGTGGTGAGCAGGTCCTGGTGCTGGCTGAGGACGTGTACAAGGAAGGCCTTCTCAAACCTGGTGATCTTGGAAGGGTCCATCTTGTCCAAGTGACCTCTGACACCAGCGTAGATGACTGTCACCTGCTCCTCAATGGCCATGGGgcctgggggagggagagaaagtaaaataaaaatacatgtctCCCCAAATGAAGGAGTGGCCCTGGTTGACAACATACAAAATGTTAAACTTTATTAGCACGCTGGGTGGTGACACTCACAGTACTGTCCCTGTTTGAGCAACTCAGTGAGGCGGACACCCCTGTTGAGCAGCTGCTGGGTGGCAGCGTCCAGGTCAGAGCCGAACTGGGCAAAGGCAGCCACCTCACGGTACTGGGCCAACTCTAGCTTCATGGTACCAGCCACCTACACACAGTAAAGGACCACAATCGTATTATGGATTTAGGAGACTGATTCCAAGTGAGAAAATACTCTAGGGTAACTGGTGAATATCAGTCCCCTTAGAGCCCCAGGTCACACCTGCTTCATGGCCTTGGTCTGGGCAGCCGATCCGACTCTGgacacagacagacccacattgaTGGCTGGGCGGATACCTTTGTAGAACAACTCAGTCTCCAAGAAGATCTGCA

Function

NR:

description
ATP synthase subunit alpha, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU574579 True 2009 lncRNA 0.44 3 40194588 40196747

Neighbor

gene id symbol gene type direction distance location
LOC110525945 LOC106585174 coding upstream 2780 40185171 ~ 40191808 (+)
LOC110525943 NA coding upstream 16492 40172320 ~ 40178096 (+)
LOC118965025 NA coding upstream 28974 40160164 ~ 40165614 (+)
LOC110525942 LOC106585173 coding upstream 39602 40147336 ~ 40154986 (+)
LOC110525934 LOC106580580 coding upstream 272865 39916138 ~ 39921723 (+)
LOC110525947 LOC106585175 coding downstream 8156 40204903 ~ 40215454 (+)
LOC110525949 LOC106585178 coding downstream 60247 40256994 ~ 40259050 (+)
LOC110525953 LOC106584961 coding downstream 89719 40286466 ~ 40309855 (+)
LOC110525028 fabpl coding downstream 118116 40314863 ~ 40317433 (+)
LOC118965077 NA coding downstream 137592 40334257 ~ 40335548 (+)
G506100 NA non-coding upstream 352 40193832 ~ 40194236 (+)
G506129 NA non-coding upstream 12201 40182170 ~ 40182387 (+)
G506127 NA non-coding upstream 13971 40180371 ~ 40180617 (+)
G506112 NA non-coding upstream 27627 40166344 ~ 40166961 (+)
G506039 LOC108412098 non-coding upstream 131974 40061587 ~ 40062614 (+)
G506157 NA non-coding downstream 62423 40259170 ~ 40260881 (+)
G506164 LOC106584960 non-coding downstream 72538 40269285 ~ 40271231 (+)
G506165 LOC106584960 non-coding downstream 74577 40271324 ~ 40272651 (+)
G506167 NA non-coding downstream 77305 40274052 ~ 40274270 (+)
G505988 NA other upstream 231490 39962652 ~ 39963098 (+)
LOC110525928 LOC106585161 other upstream 446108 39734703 ~ 39750180 (+)
LOC110525927 smim15 other upstream 514557 39673964 ~ 39680031 (+)
fancc fancc other upstream 882714 39269915 ~ 39312098 (+)
G499111 NA other upstream 6042851 34151140 ~ 34151737 (+)
G506095 atp5a1 other downstream 53 40196800 ~ 40203886 (+)
G506281 LOC106585187 other downstream 348116 40544863 ~ 40547513 (+)
G506285 NA other downstream 369320 40566067 ~ 40566429 (+)
fbxl17 fbxl17 other downstream 371979 40568637 ~ 40886427 (+)

Expression


Co-expression Network