Gene
RNA
| Item | Value |
|---|---|
| gene id | G506095 |
| gene name | atp5a1 |
| gene type | unknown |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 40196800 ~ 40203886 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| atp5a1 | Enables ATP binding activity and proton-transporting ATP synthase activity, rotational mechanism. Acts upstream of or within lipid metabolic process. Located in membrane and mitochondrion. Is expressed in several structures, including alimentary system; integumental system; nervous system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 22 and mitochondrial complex V (ATP synthase) deficiency nuclear type 4. Orthologous to human ATP5F1A (ATP synthase F1 subunit alpha). |
| description |
|---|
| ATP synthase subunit alpha, mitochondrial-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU574576 | True | 1133 | TUCP | 0.55 | 6 | 40196800 | 40203886 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110525945 | LOC106585174 | coding | upstream | 4992 | 40185171 ~ 40191808 (+) |
| LOC110525943 | NA | coding | upstream | 18704 | 40172320 ~ 40178096 (+) |
| LOC118965025 | NA | coding | upstream | 31186 | 40160164 ~ 40165614 (+) |
| LOC110525942 | LOC106585173 | coding | upstream | 41814 | 40147336 ~ 40154986 (+) |
| LOC110525934 | LOC106580580 | coding | upstream | 275077 | 39916138 ~ 39921723 (+) |
| LOC110525947 | LOC106585175 | coding | downstream | 1017 | 40204903 ~ 40215454 (+) |
| LOC110525949 | LOC106585178 | coding | downstream | 53108 | 40256994 ~ 40259050 (+) |
| LOC110525953 | LOC106584961 | coding | downstream | 82580 | 40286466 ~ 40309855 (+) |
| LOC110525028 | fabpl | coding | downstream | 110977 | 40314863 ~ 40317433 (+) |
| LOC118965077 | NA | coding | downstream | 130453 | 40334257 ~ 40335548 (+) |
| G506096 | NA | non-coding | upstream | 53 | 40194588 ~ 40196747 (+) |
| G506100 | NA | non-coding | upstream | 2564 | 40193832 ~ 40194236 (+) |
| G506129 | NA | non-coding | upstream | 14413 | 40182170 ~ 40182387 (+) |
| G506127 | NA | non-coding | upstream | 16183 | 40180371 ~ 40180617 (+) |
| G506112 | NA | non-coding | upstream | 29839 | 40166344 ~ 40166961 (+) |
| G506157 | NA | non-coding | downstream | 55284 | 40259170 ~ 40260881 (+) |
| G506164 | LOC106584960 | non-coding | downstream | 65399 | 40269285 ~ 40271231 (+) |
| G506165 | LOC106584960 | non-coding | downstream | 67438 | 40271324 ~ 40272651 (+) |
| G506167 | NA | non-coding | downstream | 70166 | 40274052 ~ 40274270 (+) |
| G505988 | NA | other | upstream | 233702 | 39962652 ~ 39963098 (+) |
| LOC110525928 | LOC106585161 | other | upstream | 448320 | 39734703 ~ 39750180 (+) |
| LOC110525927 | smim15 | other | upstream | 516769 | 39673964 ~ 39680031 (+) |
| fancc | fancc | other | upstream | 884926 | 39269915 ~ 39312098 (+) |
| G499111 | NA | other | upstream | 6045063 | 34151140 ~ 34151737 (+) |
| G506281 | LOC106585187 | other | downstream | 340977 | 40544863 ~ 40547513 (+) |
| G506285 | NA | other | downstream | 362181 | 40566067 ~ 40566429 (+) |
| fbxl17 | fbxl17 | other | downstream | 364840 | 40568637 ~ 40886427 (+) |
| G507768 | LOC105030512 | other | downstream | 1265665 | 41469551 ~ 41471408 (+) |
