G506164 (LOC106584960)


Basic Information

Item Value
gene id G506164
gene name LOC106584960
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40269285 ~ 40271231 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU574675
TGGGTCTCAATAACTGTTAATCCATTTTATTCCTTTTCAGAACGTATTGCTTACATGAATATTCTATAGGGTGGATATAACGCAAGCACAGTGAATTTATAATGAAAAACCTCTGTAATTTTAAGCCTTTTACAGATATACCGGACCATCATATTTTAAAACTGATATGCCATATTTATGTTATACTGATGTAACATTTCATGACACGTTTAATAACTTGCATCTTCTCACAGAGAAGAAATTGCATAGGTCACAAAATTATGACAATGACAATATTGCGGTGGGTCACTGAGAATCTGTGTTTGGCTAACTATCCTGCATGTTGGCACAACTCATTCCATGACAAAGGCATTCTAAAAAGCATTCTAATTGGATAATTTGTCATACTTCTCACCTGAAGGACAAACACATGGATAATGTTTATTACACACATATTACTGCCCTATAAACTCTCTAAATCTATTCTGTGATGCAAAACAGTCTCAATGTTTCTCTCTAGACAGCAAAGCTTCTCAAGACAAAGGTATTTGTGAGAACGGATTTTTCCTTGGTGCTGGCAATCATGGCACGTTACTTCAGGCCCCATGCTACATTCCCTTCAATTAATCTTAATAACGCTTATGTACATCGGAATAATTTTTGTTTACTGGCAACCTCGGCTCTAAATACAAAGTTTACTCAATGATTGAAAGAAGCTAGTGATTAAACTGTTGAGCTACAGTGTACAGTCATGGGCCTTTAAGCCATGGAGACAATCTTGCTCCCTGACCAGTGCAAGAAGACtggaaaataaacaaacattgATGTTTCTGGTCAAGGTAGCTTGACATCAAAGCAGAGCagacatcctctctctccctctcagttgTGTCTCTGTTGTTTTTACTTCTTCCTCCCTCTACCTAGCTTCCCAAAAGCTTCTTAACGTTGTTTAAATGTGCCATACCTcatcttgagagaatgtcaaATGAGTCAGCCTTGGTGCCAGTTTATTTCTGCTTTTACTAACACTTCCACCAACCAAATAAGTCCCTTAGGAGAGCAGAAGCTGTCTACCTCAGAGAAGGCATCTTGGACAGTCTGAAGACAGTCCCTTCAATGTAAGTGTGGCATCCCTCTGACTCACAGAAACCTCACAATAATATGAGGACTGAGGAGTACTAGAGTAGCTGTTGAGAAAGTAACCGCTTCTGGGAATCCAAATAAACAAGACTTATATGCATTTCTCCTGTACTGTCTCATTGCTTAGCGACACATGAAGAGCCTGGTCTTTCACACATGACTGAGTGGTCTTTCCTGCCACACCAGAAAGGTCCCTGGTTAGATGTGTCGTTTCTCTGCTCCCGTCCTCTGTATTGCTCTGCCCTGATGAATAAGAACTTCGGGGGTTTTGGACAGAGGAAGTGCGGAACCCAAACTGCTCTCCTGTGTGATGACAGCTTCCTGTGTACGTCTCACTTCCTTCGGGCAGGTAGAGAACAGTCTGAGAGGTGCTGGACACCTCCCTCAGCTCACGGGATACCAGTGAGGGTGACTCTCGAGAGGAGATGATGGAGGGGCACTGGTGGCAGTTCTGTCTCTGCTGCCGCCGTGCTCCTATCTGACAGAACAGACATTTGATCTGCTCAATGAGCTTGAGGAGCATGGCCTTGCGGAGGAGGATGTAGATCCAGGGGTCCAGGATGGGGTTGAAGGAAGCGAAGCGGATCGCCCGCAGATCTGGGTTCTTTTCCAGTCTCAGCTCCACCGGAGTCTTATACAGCTGGTTCAGAAACACCTGCACCTGCAAGGCAGAGGTAATTAATGGAATTTAATCATCTTATTTTGCCCAGCTGAGTTGAATTGACTGATATTTATGTTTTATACAGCTTGCTGACACCTGCAAGATAAATGTAATTGAATCtaattgaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

NR:

description
prostaglandin E2 receptor EP4 subtype-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU574675 True 1947 lncRNA 0.43 1 40269285 40271231

Neighbor

gene id symbol gene type direction distance location
LOC110525949 LOC106585178 coding upstream 10235 40256994 ~ 40259050 (+)
LOC110525947 LOC106585175 coding upstream 53831 40204903 ~ 40215454 (+)
LOC110525945 LOC106585174 coding upstream 77477 40185171 ~ 40191808 (+)
LOC110525943 NA coding upstream 91189 40172320 ~ 40178096 (+)
LOC118965025 NA coding upstream 103671 40160164 ~ 40165614 (+)
LOC110525953 LOC106584961 coding downstream 15235 40286466 ~ 40309855 (+)
LOC110525028 fabpl coding downstream 43632 40314863 ~ 40317433 (+)
LOC118965077 NA coding downstream 63108 40334257 ~ 40335548 (+)
LOC118964866 fabpl coding downstream 80181 40351412 ~ 40354009 (+)
LOC110525029 fabpl coding downstream 98934 40370165 ~ 40372761 (+)
G506157 NA non-coding upstream 8404 40259170 ~ 40260881 (+)
G506096 NA non-coding upstream 72538 40194588 ~ 40196747 (+)
G506100 NA non-coding upstream 75049 40193832 ~ 40194236 (+)
G506129 NA non-coding upstream 86898 40182170 ~ 40182387 (+)
G506165 LOC106584960 non-coding downstream 93 40271324 ~ 40272651 (+)
G506167 NA non-coding downstream 2821 40274052 ~ 40274270 (+)
G506169 NA non-coding downstream 7791 40279022 ~ 40279306 (+)
G506170 NA non-coding downstream 8154 40279385 ~ 40279614 (+)
G506179 NA non-coding downstream 19062 40290293 ~ 40290528 (+)
G506095 atp5a1 other upstream 65399 40196800 ~ 40203886 (+)
G505988 NA other upstream 306187 39962652 ~ 39963098 (+)
LOC110525928 LOC106585161 other upstream 520805 39734703 ~ 39750180 (+)
LOC110525927 smim15 other upstream 589254 39673964 ~ 39680031 (+)
G506281 LOC106585187 other downstream 273632 40544863 ~ 40547513 (+)
G506285 NA other downstream 294836 40566067 ~ 40566429 (+)
fbxl17 fbxl17 other downstream 297495 40568637 ~ 40886427 (+)
G507768 LOC105030512 other downstream 1198320 41469551 ~ 41471408 (+)
G508559 dph7 other downstream 1857994 42129225 ~ 42131940 (+)

Expression


Co-expression Network