G506165 (LOC106584960)


Basic Information

Item Value
gene id G506165
gene name LOC106584960
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40271324 ~ 40272651 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU574676
gcgatgTATTGCCAAATTGTTCAACAAATCATGGCTAAGCATTTTATGGATCTAGCTGTCTGAAGGCACACCTGTCCTTATGGAGACTGATGTGAGCAGCATACAAAGCAGAATATGCAATATAGGCCTACACTACTATGCAAATCAGCTATGAGAAAACTATTCTAATGTCAGGTTGGGACTATTAACAACTCATGAAGTCACAATGACTTACAGGCATTGTGCGTAAAATATCAAAtcgtgtgtacatgtgtatctTGTGCGTAAATAATTAAAATAGTCTTTGTGCGATTAGGAAAATGTGTAAAATGGTTCTCAAAGTGAGAAGAGAAACTTACAACTAGTGGAATGGAGCATATGAGCACCACCGCTGAGGTGCATATGAGTACAATCACCATCTGGATCTCCGCGCCGGCCAGATTCCCGAAGTTGCGTCTCCTTCTTGGGTCTGTGTTTCGCCCTGGGTCTGTCCCCAACGACATCCTCCGAACGAACTGCCGGTGCATCCGGATCAAAGCCCCGCACACCAGAACGTTACAGATCACCGTGGCCAGAATTAGAATCGAACTTGATCCCGCGTAGATGTAAGAAAATGTGGCATCAGTACTCACGTTGCTCCGCCACTCTATGAAGCACCAGGTTTGTGGGTACTGCTTTTTGACTTGTCCCAGACCCATACTAGGCATAGCGCAGAAAAGCGCATTGGAGATGTAGATAGCCAGAAGAGTCAACCCCGCCAGTCTCTGATCCACATAGTCGTTGTAGAAATACGCATGGTTTATCGCCAAGTATCTCTCTACGGACATTGCGCATATGATGCTGAGCCCCGctaaagagaagaagaggaggatgaatcCGAAATACTGGCAGAGTGGGTCCCCGCCTGGCCAAGATCCTTTCACATAAGTGGCGATGGTGACTGGACTGGCCAGGAGGGTCCCCAAAAGGTCCGTAACTGCCAGACCGCAAACCAGCGTGTAGAACGTGGTCTCCTTCTGCTCTTTCCTGGACTTGCAGAGCACCACGATGGCGATTACATTTCCCACCACTCCGAAAATAAACATGATGGAAGGTATAGTCGGGACCATGGTCCTCCCGGTCACAGTATTGTTACTCATTGTAGTATGTCCAgattatgtatatttttttaaatacttcaTTCACATTATAAGCTATccttcatttttttttacaagtaaAGACTACTGTAGATGCTTTAGGCATATTATCTACATAAATTAAACTTATCAAACATGATTGAAATATTCATGCTGAATGTGAGCTGAACCGATCTACTCACAACAGAAGTTAGAACGCCTTTAAAACGG

Function

NR:

description
prostaglandin E2 receptor EP4 subtype-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU574676 True 1328 lncRNA 0.45 1 40271324 40272651

Neighbor

gene id symbol gene type direction distance location
LOC110525949 LOC106585178 coding upstream 12274 40256994 ~ 40259050 (+)
LOC110525947 LOC106585175 coding upstream 55870 40204903 ~ 40215454 (+)
LOC110525945 LOC106585174 coding upstream 79516 40185171 ~ 40191808 (+)
LOC110525943 NA coding upstream 93228 40172320 ~ 40178096 (+)
LOC118965025 NA coding upstream 105710 40160164 ~ 40165614 (+)
LOC110525953 LOC106584961 coding downstream 13815 40286466 ~ 40309855 (+)
LOC110525028 fabpl coding downstream 42212 40314863 ~ 40317433 (+)
LOC118965077 NA coding downstream 61688 40334257 ~ 40335548 (+)
LOC118964866 fabpl coding downstream 78761 40351412 ~ 40354009 (+)
LOC110525029 fabpl coding downstream 97514 40370165 ~ 40372761 (+)
G506164 LOC106584960 non-coding upstream 93 40269285 ~ 40271231 (+)
G506157 NA non-coding upstream 10443 40259170 ~ 40260881 (+)
G506096 NA non-coding upstream 74577 40194588 ~ 40196747 (+)
G506100 NA non-coding upstream 77088 40193832 ~ 40194236 (+)
G506167 NA non-coding downstream 1401 40274052 ~ 40274270 (+)
G506169 NA non-coding downstream 6371 40279022 ~ 40279306 (+)
G506170 NA non-coding downstream 6734 40279385 ~ 40279614 (+)
G506179 NA non-coding downstream 17642 40290293 ~ 40290528 (+)
G506185 NA non-coding downstream 21197 40293848 ~ 40294017 (+)
G506095 atp5a1 other upstream 67438 40196800 ~ 40203886 (+)
G505988 NA other upstream 308226 39962652 ~ 39963098 (+)
LOC110525928 LOC106585161 other upstream 522844 39734703 ~ 39750180 (+)
LOC110525927 smim15 other upstream 591293 39673964 ~ 39680031 (+)
G506281 LOC106585187 other downstream 272212 40544863 ~ 40547513 (+)
G506285 NA other downstream 293416 40566067 ~ 40566429 (+)
fbxl17 fbxl17 other downstream 296075 40568637 ~ 40886427 (+)
G507768 LOC105030512 other downstream 1196900 41469551 ~ 41471408 (+)
G508559 dph7 other downstream 1856574 42129225 ~ 42131940 (+)

Expression


Co-expression Network