G506247


Basic Information

Item Value
gene id G506247
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40492027 ~ 40493232 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU574773
atgtgtcactgcaaccttaaaagtcctgaatgatgtcaccattgcccttgattctaagcaatattgtgctgctatttatattgacttggccaaagcttttgatacggtagaccattccattcttgtgggccggttAAGGgttattggtgtctctgaggggtttttggcctggtttgctaactacctctctcaaagagtgcagtgtttaACTGTGGCTgcctcagccactgcctgtcaccaagggggtaccccaaggctcaatcctaggccccacactcttcacaatttacatcaacaacatagctcaggcagtaggaagctctctcatccatttatatgcagatgatacagtcttatactcagctggcccctccccggattttgtgttaaatgctcttcAACAAagatttcttagtgtccaacaatctctacccttaaccttgttctgaatgcccctcttcccacaggtgttattactacctctgatggtttagagcttgaggtagtcacctcatacaagtacttgggagtatggctagatggtgcactgtccttctctcagcacatatcaaagatacaggctaaagttaaatctagtcttggtttcctctattgtaatcgctcctctttcaccccagctgtcaaactaaccctgattcagatgaccatcctacccatgctagattacggagacataatttatacaTCGGctggtaagggtgctctcgagcggctaatgttctttaccattcggccatcagatttgccaccaatgctccttataggacacatcactgcactctatactcctctgtaaactggtcatctctgtatacccgtcgcaagacccactggttgatgcctATTTATAAAATCCTCTTCGGACTCACTCTCCACTATCTGAAATATCTACTGCAGCCCACATCctacacatacaacacctgttctgccagtcacattatgttaaaggtccccaaagcacacatatccctgggtcactcctcttttcagttcgctgcagctagtgactggaaggTGCTGCAACAaatactcaaactggacagttttatttcaatctcttcattcaaagactcaatcatggacactcttactgacagttgtggctgttttgtgtgatgcattgttgtctctaccttcttgaagtttgtgctgttgactgtgcccaataatgtttgtaccatgatt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU574773 True 1206 lncRNA 0.44 1 40492027 40493232

Neighbor

gene id symbol gene type direction distance location
LOC110525957 LOC106585182 coding upstream 2175 40476037 ~ 40489852 (+)
LOC110525958 LOC106585182 coding upstream 16119 40469471 ~ 40475908 (+)
LOC110515135 fabpl coding upstream 39865 40449567 ~ 40452162 (+)
LOC110525956 fabpl coding upstream 51116 40438659 ~ 40440911 (+)
LOC110526900 fabpl coding upstream 74583 40414867 ~ 40417444 (+)
LOC110525959 LOC106585184 coding downstream 7425 40500657 ~ 40506112 (+)
avp neu4 coding downstream 24359 40517591 ~ 40519539 (+)
ccl27a ccl28 coding downstream 27742 40520974 ~ 40524282 (+)
slc35d2 LOC106585185 coding downstream 34606 40527838 ~ 40533844 (+)
fbxl17 fbxl17 coding downstream 75405 40568637 ~ 40886427 (+)
G506248 NA non-coding upstream 259 40491346 ~ 40491768 (+)
G506249 NA non-coding upstream 1109 40490578 ~ 40490918 (+)
G506254 NA non-coding upstream 14804 40477015 ~ 40477223 (+)
G506251 NA non-coding upstream 17888 40473106 ~ 40474139 (+)
G506250 NA non-coding upstream 19600 40472001 ~ 40472427 (+)
G506280 NA non-coding downstream 47269 40540501 ~ 40540903 (+)
G506281 LOC106585187 non-coding downstream 53081 40544863 ~ 40547513 (+)
G506336 NA non-coding downstream 144601 40637833 ~ 40639089 (+)
LOC110525949 LOC106585178 other upstream 232977 40256994 ~ 40259050 (+)
G506095 atp5a1 other upstream 288141 40196800 ~ 40203886 (+)
G505988 NA other upstream 528929 39962652 ~ 39963098 (+)
LOC110525928 LOC106585161 other upstream 743547 39734703 ~ 39750180 (+)
LOC110525927 smim15 other upstream 811996 39673964 ~ 39680031 (+)
G506285 NA other downstream 72835 40566067 ~ 40566429 (+)
G507768 LOC105030512 other downstream 976319 41469551 ~ 41471408 (+)
G508559 dph7 other downstream 1635993 42129225 ~ 42131940 (+)

Expression


Co-expression Network