G506281 (LOC106585187)


Basic Information

Item Value
gene id G506281
gene name LOC106585187
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40544863 ~ 40547513 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU574816
GTGGCATTTAATTTTAGAAAGCTGGTATACTCCATGTGCTCCGAGCAGATATATAATGCACGATAATTATGAATGAGATGAGGCCCCTTTAGGACCATTTTGTATGTAAGACTGATTACAATTGATAGCATGGTTGATCATAACAAGTACAAAAATATTTACAAAgtacaaatacatttttcagtATATCAAAATGTTGACTTATTTACAGTTTAAGTACAGCAGCTCAACAAAAAAAGACAACCAACTAGAAGCTTCACTGGAGAATGAAAGAAAGCTGGAGCATATTAAGGGTGCTATTCAGTCTGCGTCGCTGAAGCGCTAGAAACGTAAAGATCATTTCTGATTGAACGGACATATGCagagtttaccgtgaatgcagtgtctgctaacgcgggaacattgccATTCAATTTCAATCAATCGGGAACTTTGAACTTcccgcgatacggattgaatagagccaaGTGAAATACAACAAGCGAAATTAGGATTTACAACTCTGGAAAAACCattgattatttaaaaaaaaaaagagggtgGCATTGTATTACTTCTGTGCATTACATTTCTGTCTATAACATTCTGAAAGATGCTCCCCAAAGAGCATACCCCCTAGAGTAGACATGGTGCCGACATGAGCTTTTCCGACATGTTCAAGAGGGCCGACATGAGCTTTTCACAAATGATTTCATCTACAAAACACCTCAACTTCCAAACAGCTGGACATGACCTGATCTAGATCATACAACAGGTTAAGAAAAGTGGACGGTGCCTACCTCTGGAGGACCTACACCAAAAAAGCAGATTGACAGTCTGATGGTTCAGGATCAGCCTGGATTGCTATGGCAACCTTCTACTAGTATGTAAACAAGCAGGCAACAAATGTGtgaaatggaactctattcccatTACTTATGGCCAGGACTAATGTATAGAGAACAGGGTTTCATTTTAAGATGCACACAACCTTTTTTAAATTTTCTTCCACGATAAACAGTGAAATATACAATAAAAGAAGTGCCTTTTGATAAAGAGAGTTGGCAAATTAATTCCAAACCAACCAAACATGGTTTACATCTTAATCATATCTGATAACTCGTTCTTCCCATTCACAATCAGAGGCATCATTTCCTCATCGAACATCATCCCTTTATCAAAAATCGACTGGACTGgttcaagaaaaaaaaaaaaaaacagtccctTTTAAGAAATGAAAACAAAATCTCCATTTTTAGGAGCTGTAGGGTAGACTTCTACAGGAGTCCACTCTTAGAATTCCGGGACCGGAGGCTCAGCGCAGTAGAGGAGCTCTAGCTTTTGGTATGGAGTGTAAAGAGCTGGAGAGACTGTTCAAGTGTTTGAGCCGGAGTGTCGGAAGCCTAGAGTACAAACAGATATAGAAGGCGTTTGCTCATATGAAATGTAAAGTTAAGCAGACCCTTGGTGTGTGGGGGACCCGcagagtaggagagagtgaggTTGAGCCCAGAGAAAGGGTTGAGGAGGGGCTTGCCTTCCGAGGGGCCTGCAGCATGTTTAGGTTGGGCAGGTTGACTGTGTCTCTACGGCAACAACTGGGCTCACGGCACACTGGCTCTCTGTCACTGGTCACTACATGCATGCTGTCTAGAGACCTGGCTAGTCTGGAGTGGCACAGGGAGCTGGCAGAGGAGGGAAGGGGTTCATCGAGTCATCATAAACCATGTATGGCTAAGGCTCATTCTGTCCAGTTTACTTCACAGAAGTAACTATTTTCTGTATgactgagtatatataaccttcaaACATTTGACAGAATATTCAGCTAACAAATATGAGAAAGAGAGCAAACTAGATCAGCATTACCTCTGACAAATCCTAACTTGAGTTACCCACACCGTATACAGACTTTCACATTAATATTGCACTGCTGTCGATGAAAGTACTAGTTGGAATTCAATAGTACGGCTTATTGGAGACATTGACACTAACCTGCCCCCCACACTATTGGCAGGCAGTGAGGTTCTGGTTCTCTTCCTTTTCTCGGAGGCATcagggagatgggaggggttcACCACAGCTTTACAGCTCTGCCCACTGGACTGAAGGAG
>TU574815
ACAAAAACACAATATGCAAGACTCTACTATGCATGCAGTCAGTCTATTCTAATCTTATAAAGGACTTAGAGATGTGGGCAATTAAGAGTGCAGGTTGTCTGGAGACACACAACAGCATAGCTGAGCAATGAGCCATACAAAAGGGATAGAAAAGGGAAACGGATACCATAGTCTCGTTAAGCGCATTGATTGTAAAGAGCATCGAGTTCTCCGTCTTCTGGACACAGTGCGTCTGCCCCCACACTATTGGCAGGCAGTGAGGTTCTGGTTCTCTTCCTTTTCTCGGAGGCATcagggagatgggaggggttcACCACAGCTTTACAGCTCTGCCCACTGGACTGAAGGAG

Function

NR:

description
dual specificity protein phosphatase CDC14B-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU574816 False 2093 TUCP 0.42 2 40544863 40547513
TU574815 True 350 lncRNA 0.47 2 40546313 40547513

Neighbor

gene id symbol gene type direction distance location
slc35d2 LOC106585185 coding upstream 12469 40527838 ~ 40533844 (+)
ccl27a ccl28 coding upstream 22031 40520974 ~ 40524282 (+)
avp neu4 coding upstream 26774 40517591 ~ 40519539 (+)
LOC110525959 LOC106585184 coding upstream 40201 40500657 ~ 40506112 (+)
LOC110525957 LOC106585182 coding upstream 56461 40476037 ~ 40489852 (+)
fbxl17 fbxl17 coding downstream 21124 40568637 ~ 40886427 (+)
efna5b LOC106585191 coding downstream 427866 40975379 ~ 41084448 (+)
LOC110525969 NA coding downstream 635335 41182848 ~ 41188172 (+)
LOC110525974 selenop coding downstream 910774 41458287 ~ 41461918 (+)
LOC118964869 NA coding downstream 968226 41515545 ~ 41522572 (+)
G506280 NA non-coding upstream 5410 40540501 ~ 40540903 (+)
G506247 NA non-coding upstream 53081 40492027 ~ 40493232 (+)
G506248 NA non-coding upstream 54545 40491346 ~ 40491768 (+)
G506336 NA non-coding downstream 90320 40637833 ~ 40639089 (+)
G506382 NA non-coding downstream 152547 40700060 ~ 40700389 (+)
G506417 NA non-coding downstream 216976 40764489 ~ 40766041 (+)
G506471 NA non-coding downstream 313577 40861090 ~ 40940073 (+)
G506511 NA non-coding downstream 370476 40917989 ~ 40925687 (+)
LOC110525949 LOC106585178 other upstream 287263 40256994 ~ 40259050 (+)
G506095 atp5a1 other upstream 342427 40196800 ~ 40203886 (+)
G505988 NA other upstream 583215 39962652 ~ 39963098 (+)
LOC110525928 LOC106585161 other upstream 797833 39734703 ~ 39750180 (+)
LOC110525927 smim15 other upstream 866282 39673964 ~ 39680031 (+)
G506285 NA other downstream 18554 40566067 ~ 40566429 (+)
G507768 LOC105030512 other downstream 922038 41469551 ~ 41471408 (+)
G508559 dph7 other downstream 1581712 42129225 ~ 42131940 (+)
G509160 NA other downstream 2019592 42567105 ~ 42570169 (+)

Expression


Co-expression Network