G507906 (selenop)


Basic Information

Item Value
gene id G507906
gene name selenop
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 41421024 ~ 41461922 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU576563
GCAATATGAGTGCATCAACCATCTTTATTCGGCATTTCTTACATGCTACACCACCTAACAGTCCACAGTCAGAATGAACGTGTTCTGTACAAAGCATCAGGTGTTCTAGGTGACAGTTGTCTTCCCCTAGAGCCCTTCATTAAGTACAGAATGGATTCAAACAATCGTTCAATCTTTTCTGTTTACCCACCTCTCATTCTAGACGGTTTCTTTTGCTAGTTAAAAAGTGTTCCCGATCATTTGTTAGTCGAAAAAAAGTGTTCACTATTTTGTTAGTTGAAAACAGTTCTCTGTTTTGCTAGTTCACAAAGAGTGCATTATACATATGTGCAATATTGCCAAACTAAAATAACTCAGTGACTAACTAAACACACATCCTCACAGCTGTAAGCAATGGATACTGACGTTTGAAAGCTTTATCTACATAACACACTACTGCTCCAAAACACCTGAGAGTTAATTAAATTGCAAAAGTAAAATGTTAGTGAGATCCCAATTTTTTTGGAGGcctaataaaaaaaatctgaactatCAATAATGTATTTGGACCAAATTGGTTTTGCTAACACTGAGTATAACAACTTTGGTTCAGGTCTATCTCTCCCAGCCATCATGCCAGTTTGTTCAGCATAGGCAACTACTACTACATACTCCTTCCAAAGCTCTCGATATTTTGAACTTTAGGGGGTGGTCATATTATAAGTCCCTCCCGTTCCCCTCTCCCCAGCCGGACATCAGACAGACGCCACTAGAGCGTAGTTTCTGCGCCTGCCTTCACTGTGGATGGAGGGAGCAAAACAGAGCAGGAGAAACGTTAACATAATCACCCCATACACTCCTGGGAGGGTGACACCAACGCACTGACAGAGATGGTGGAGGACACCCACCTTGCCATCACTATGGTCACATCTCAAATGCAATCCTTTCCCCCATATCGTAATGGGTTTAGGCTTGGCATTCACCTACCACACCCAATGTgtgtcctcccatctctccctgtcaGGGGTGGCTTCACGGTCCCAGGGTAATACTAGTTGGTAAGATGTTATAAGAGCGGTTCGCCCCGGGTGTTTGTCTCACAGATGTTAATCTGAGGCCTATAAGGTATAGCAAGGTAACTGTCACAGAGCCATGGCCCTGCTTACAGCAGCCCTCACCCTCAGCTCTCAACACCCAGGGGTCAGGCTCACATGACTGGCTGAGGCTGCTGTCAGTCAGCGAGGGACGAGCGTCACTGTCAGGTCTCCCTGAGGCCTATCAGTCCCTGTCACTGTCAGGAGGCGGGCAGCGCCTCATCACAGTGTCAGAGCCCGATTGGCTCGTTGCTCACCCCATCGCCAAACAGCCTCCGTCAGTGTCAGCATCAGCTGGCCTTGGAAGAGGGACTTAGATCAGACCCCTCCTTCCACTGTCAGCTGTGCTCCGCCTTTCACCTGGACTTCCCCTTCACTCAGGGATTCTGCATAATATGGCCTCGCTGCCCTTCCTGGGGCATCTGGCCCAGTTGCACTGCCTGCTGACCCATATGCTCCTGACCAACGTGCAACTGGCCATGGGCCTGGCCGTGTTGGAGCCCCTCAGTGTCATGTTGGTGCTGCTGCTCGGCCCCATGATCACGACCGTGACCGcgccccatccccctctcaccATGGTGATCGTGACCATGGCGGTTGCCATTGTGACCATGGCGGTTGCCATTGTGACCGTGACCATGGTGATGATGGCCGTGTCCACCATGAGTTGTCTCCCTTCCGGTGACTggcttctcctctccctcaggcTTTGCCTCTACTGTCCTGctctctctgctgtttcct

Function

symbol description
selenop Predicted to enable selenium binding activity. Acts upstream of or within selenium compound metabolic process. Located in extracellular region. Is expressed in several structures, including female organism; head mesenchyme; pronephric duct; yolk; and yolk syncytial layer. Orthologous to human SELENOP (selenoprotein P).

NR:

description
selenoprotein P

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU576563 True 1817 TUCP 0.49 2 41421024 41461922

Neighbor

gene id symbol gene type direction distance location
creb3l3l LOC106585194 coding downstream 16178 41396241 ~ 41404846 (-)
gadd45ga LOC106585195 coding downstream 28609 41390670 ~ 41392415 (-)
LOC110525030 NA coding downstream 121042 41298126 ~ 41299982 (-)
LOC118965078 NA coding downstream 180190 41240023 ~ 41240834 (-)
LOC118964868 NA coding downstream 811114 40607825 ~ 40609910 (-)
ghra LOC106585200 coding upstream 13057 41474979 ~ 41540150 (-)
fbxo4 fbxo4 coding upstream 100162 41562084 ~ 41565993 (-)
c6h5orf51 LOC106585203 coding upstream 104129 41566051 ~ 41570657 (-)
rgs7bpa LOC106585207 coding upstream 273181 41735103 ~ 41752960 (-)
si:dkey-250l23.4 LOC106584965 coding upstream 297557 41759479 ~ 41769211 (-)
G507895 NA non-coding downstream 41538 41379244 ~ 41379486 (-)
G507894 NA non-coding downstream 41982 41378772 ~ 41379042 (-)
G507887 NA non-coding downstream 52095 41367960 ~ 41368929 (-)
G507626 NA non-coding downstream 152699 41268023 ~ 41268325 (-)
G507605 NA non-coding downstream 168959 41251860 ~ 41252065 (-)
G507945 NA non-coding upstream 1656 41463578 ~ 41464095 (-)
G507948 NA non-coding upstream 18233 41480155 ~ 41480364 (-)
G507953 NA non-coding upstream 24420 41486342 ~ 41486621 (-)
G507957 NA non-coding upstream 27827 41489749 ~ 41490032 (-)
G507959 NA non-coding upstream 32200 41494122 ~ 41494345 (-)
G507063 NA other downstream 878695 40540659 ~ 40542329 (-)
G506785 NA other downstream 1531093 39887022 ~ 39889931 (-)
LOC110525932 LOC106585164 other downstream 1582864 39826260 ~ 39877951 (-)
LOC110525929 LOC106585162 other downstream 1656248 39751726 ~ 39778538 (-)
G506641 NA other downstream 1796680 39623685 ~ 39624344 (-)
G508303 NA other upstream 358933 41820855 ~ 41821210 (-)
G508891 NA other upstream 682175 42144097 ~ 42144885 (-)
G509034 LOC106585214 other upstream 910519 42372441 ~ 42403220 (-)
G509432 NA other upstream 1181597 42643519 ~ 42645869 (-)
G509902 NA other upstream 1614770 43076692 ~ 43077157 (-)

Expression


Co-expression Network