G507747


Basic Information

Item Value
gene id G507747
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 41553432 ~ 41557576 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU576391
ATGAAACCATGTTTGCTGTCTGTGCGGGATAAATAGTCACGCAACAACAAACAGCATATTCAAACATGCTCTCTCCCAGGGCGTCACATATCCTGGAGGGAAGGAAACCAGAAGCAGCCGTCGATCTGGAACCCATCCCCCTTCCAGAACATGACCCTTGAACCAGCCCCACCCTCCAAGTGTATAGATTTAGCTCTAGCTCTAGTTCCAGTCTCAGTCCCTGCCTTGGGTCCAACCTCCAGTCCCTAAACCTCTATTCTATACAAATCCAAGCCATCTCCATTTCCCTCTGTGGGTAGAGGCAAAAAAGACTTCCCTGCCCCTACTGGGTTCCAGCAGACCGCCAAACACTAGtagctactatcttgtctcatcgctacaactcccgtacgggctcgggagagacgaaggttgaaagtcatgcgtcctccgatacacaaccaaccaagccgctgcttctttaacacagcgcacatccaacccggaagccagccgcaccaatgcgccggaggaaacaccgtgcacctggccaccttggttagcgtacactgcgcccagcccgccacaggagtcgctggtgcgcgatgagacaaggacacccctaccgaccaagccctccctaacccgggcgacgctaggccaattgtgcgtcgccccacggacctcccggtcgcggccggttacgacagagcctgggcacgaacccaggactctgatggcacagctggcgctgcagtacagcgcccttaaccactgcgccacccgggaggcctataTTATTCAATATTACATTTACACCCCTAAAACATCCAGCTGACTGTGTCCATGTCTGTTTAAGTGACTGATTAGAGGGAGAAGCagggagatacagttgaagtcgggaagtttacatacacttaggttggagtcattaaaactcgtttttcaaccactccacaaatgtcttgttaacaaactatagttttggtaagtcagttaggacatctactttgtgcatgacacaagttatttttccaacaattgtttacagacagattatttcacttataattcactgtatcacaattccagtggatctgAACATataataagttgactgtgcctttaaacaggttggaaaattccaaaaaatgaagtcatggctttagaagcttctgataggctaactgacataatctgagtcaattggaggtgtacctgtggatgtatttcaaggtctaccttcaaactcagtgcctctttgcttgacatcatggaaaaataaatcagccaagacctcagaaaaaaatgtgtagacctccacaagtctggttcatccttgggagcaatttccaaatgcctgaaggtaccacgttcatctgtacaaacaatagtacgcaaatataaacaccatgggaccacgcagccgtcataccgctcagggaggagacatgttctgtctcctagagaggaacgtactttggtgcgaaaagtgcaaatcaatcccagaacaacagcaaaggaccttgtgaagatgctggaggaaacaggtacaaacatatctatatccacagtaaaatgagtcctatgtcgacataacctgaaaggccgctaagcaaggaagaagccactgctccaaaaccgccataaaaaagccagactacggtttgcaactgcacatggggacaaagatcggaaaagggggaggcttgcaagccgaagaacactatcccaaccatgaagcacgggggtggcagcatcatgttgtgggggtgcgttgctgcatgagggactggtgcacttcacaaaatagatggcatcatgaggtatgaaaattatgtggatatattgaagcaacatctcaagtcatcagtcaggaagttaaagcttggtcacaaatgggtcttccaaatggacaatgaccccaactatacttccaaagttgtggcaaaatagcttaaagacaacaaagtcaaggtattggagtggccatcacaaagccctgacctcaatcctatagaaagtttgtgggcagaactgaaaaagtgtgtgcgagcaaggaggcctacaaacctgactcagttataccagctctgtcatgaggaatgggccaaaattcacccaacttattgtgggaagcttatggaaggctacccgaaatattTGACCtaagtaaaacaatttaaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgacccaatgggaatgtgattaaataaattaaagatgaaataaataatgctctctattattattctgacatttcaaattttttaaataaaatggtgttcctaactgacctaagacagggagtgTTTACTCCCTggagtaaatgtcaggaaatttgagaaactgagtttaaatgtatttggctaaggtgtatgtaaacctccgacttcaactgtacatcctgTTTAGAGTAGCCTGCTGTATAAAAGGGGCAGTTGTCACATTAAAGCCCTCACTCTTCCTCTATTACGCCCAGTCTGATTTCACCATCTAGAGAGCGCTGCTGCCATCTCCCTTCTCTATTCACACTGGATTTAATGCACCCAAATTGCACCAATTATGACTGCATTCTAAATCTGTATTTCCGTGACGATGATTACTACAATTTTGTGACCTTTTGAGACGGCGGTGCAGAAAAGAGTAGGTTAGGGAGACGATTCTCCACTTTGTTGCCAAGGGAACTAGAACAAAAGACAGGTGTTAAAGTACATTAGTGCTTCATTGAATTTGGCACATTATCCTATTATAGTTGACAATGTGTGCAAAGGAGGGATGAAAATCAGTTGCTTACGTCCA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU576391 True 2819 lncRNA 0.45 3 41553432 41557576

Neighbor

gene id symbol gene type direction distance location
LOC118964869 NA coding upstream 30860 41515545 ~ 41522572 (+)
LOC110525974 selenop coding upstream 91514 41458287 ~ 41461918 (+)
LOC110525969 NA coding upstream 365260 41182848 ~ 41188172 (+)
efna5b LOC106585191 coding upstream 468984 40975379 ~ 41084448 (+)
fbxl17 fbxl17 coding upstream 667005 40568637 ~ 40886427 (+)
oxct1a LOC106580620 coding downstream 13428 41571004 ~ 41677673 (+)
plcxd3 plcxd3 coding downstream 121197 41678773 ~ 41700121 (+)
c7a c7-2 coding downstream 165597 41723173 ~ 41729381 (+)
LOC118964870 NA coding downstream 197103 41754679 ~ 41757203 (+)
htr1aa LOC106585208 coding downstream 214141 41771717 ~ 41773955 (+)
G507797 NA non-coding upstream 47254 41505901 ~ 41506178 (+)
G507794 NA non-coding upstream 53411 41499560 ~ 41500021 (+)
G507790 NA non-coding upstream 56695 41496387 ~ 41496737 (+)
G507788 NA non-coding upstream 57640 41495467 ~ 41495792 (+)
G508104 NA non-coding downstream 199655 41757231 ~ 41757833 (+)
G508300 NA non-coding downstream 262207 41819783 ~ 41820050 (+)
G508301 NA non-coding downstream 262563 41820139 ~ 41820424 (+)
G508312 NA non-coding downstream 269276 41826852 ~ 41827335 (+)
G508355 NA non-coding downstream 302008 41859584 ~ 41859819 (+)
G507768 LOC105030512 other upstream 82024 41469551 ~ 41471408 (+)
G506285 NA other upstream 987003 40566067 ~ 40566429 (+)
G506281 LOC106585187 other upstream 1005919 40544863 ~ 40547513 (+)
LOC110525949 LOC106585178 other upstream 1294382 40256994 ~ 40259050 (+)
G508559 dph7 other downstream 571649 42129225 ~ 42131940 (+)
G509160 NA other downstream 1009529 42567105 ~ 42570169 (+)
G510416 NA other downstream 2099892 43657468 ~ 43658493 (+)
G512192 LOC106584908 other downstream 3626863 45184439 ~ 45185869 (+)
LOC110526028 ccdc60 other downstream 3660151 45187119 ~ 45236944 (+)

Expression


Co-expression Network