G508474


Basic Information

Item Value
gene id G508474
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42021426 ~ 42021768 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU577207
ATCAGGGACATGCAACTAcagttttccttcacagaaaatacattagcgcaacactatttggctggcagccacacaagtaaattAGCTTACAAGGAAATagcaatgtctttttttttgcAAGAACAatgcatggccatcatatttctaatgtttattCATAGAAAGagtgtagccagctacatttcctaatgttttgtttaaagtactggagaaaagtagttggtcaaatcaaatcaaattttattggtcacatacacatggttagcagatgttaatgcgagtgtagcaaaatgcttgtgcttctagttctgacattacagtaatatctaacaagtcatttaac

Function

NR:

description
LOW QUALITY PROTEIN: transcription and mRNA export factor ENY2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU577207 True 343 lncRNA 0.35 1 42021426 42021768

Neighbor

gene id symbol gene type direction distance location
htr1aa LOC106585208 coding upstream 247471 41771717 ~ 41773955 (+)
LOC118964870 NA coding upstream 264223 41754679 ~ 41757203 (+)
c7a c7-2 coding upstream 292045 41723173 ~ 41729381 (+)
plcxd3 plcxd3 coding upstream 321305 41678773 ~ 41700121 (+)
oxct1a LOC106580620 coding upstream 343753 41571004 ~ 41677673 (+)
paxx ci142 coding downstream 115285 42137053 ~ 42143608 (+)
LOC110525988 LOC106584966 coding downstream 222737 42244505 ~ 42249266 (+)
stxbp1b LOC106585214 coding downstream 350763 42372531 ~ 42415108 (+)
camsap1b LOC106585218 coding downstream 581540 42603308 ~ 42645904 (+)
LOC110525996 LOC106585219 coding downstream 624266 42646034 ~ 42655499 (+)
G508473 NA non-coding upstream 119 42021092 ~ 42021307 (+)
G508471 NA non-coding upstream 4199 42017001 ~ 42017227 (+)
G508470 NA non-coding upstream 4540 42016650 ~ 42016886 (+)
G508469 NA non-coding upstream 5044 42016146 ~ 42016382 (+)
G508465 NA non-coding upstream 11088 42010123 ~ 42010338 (+)
G508481 NA non-coding downstream 12143 42033911 ~ 42034557 (+)
G508484 NA non-coding downstream 15911 42037679 ~ 42037927 (+)
G508497 NA non-coding downstream 30227 42051995 ~ 42052214 (+)
G508499 NA non-coding downstream 33184 42054952 ~ 42055151 (+)
G508530 NA non-coding downstream 70853 42092621 ~ 42092883 (+)
G507768 LOC105030512 other upstream 550018 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 1161904 40568637 ~ 40886427 (+)
G506285 NA other upstream 1454997 40566067 ~ 40566429 (+)
G506281 LOC106585187 other upstream 1473913 40544863 ~ 40547513 (+)
LOC110525949 LOC106585178 other upstream 1762376 40256994 ~ 40259050 (+)
G508559 dph7 other downstream 107457 42129225 ~ 42131940 (+)
G509160 NA other downstream 545337 42567105 ~ 42570169 (+)
G510416 NA other downstream 1635700 43657468 ~ 43658493 (+)
G512192 LOC106584908 other downstream 3162671 45184439 ~ 45185869 (+)
LOC110526028 ccdc60 other downstream 3195959 45187119 ~ 45236944 (+)

Expression


Co-expression Network