Gene
RNA
| Item | Value |
|---|---|
| gene id | G508539 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 42100627 ~ 42100834 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Retrovirus-related Pol polyprotein LINE-1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU577273 | True | 208 | lncRNA | 0.34 | 1 | 42100627 | 42100834 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| htr1aa | LOC106585208 | coding | upstream | 326672 | 41771717 ~ 41773955 (+) |
| LOC118964870 | NA | coding | upstream | 343424 | 41754679 ~ 41757203 (+) |
| c7a | c7-2 | coding | upstream | 371246 | 41723173 ~ 41729381 (+) |
| plcxd3 | plcxd3 | coding | upstream | 400506 | 41678773 ~ 41700121 (+) |
| oxct1a | LOC106580620 | coding | upstream | 422954 | 41571004 ~ 41677673 (+) |
| paxx | ci142 | coding | downstream | 36219 | 42137053 ~ 42143608 (+) |
| LOC110525988 | LOC106584966 | coding | downstream | 143671 | 42244505 ~ 42249266 (+) |
| stxbp1b | LOC106585214 | coding | downstream | 271697 | 42372531 ~ 42415108 (+) |
| camsap1b | LOC106585218 | coding | downstream | 502474 | 42603308 ~ 42645904 (+) |
| LOC110525996 | LOC106585219 | coding | downstream | 545200 | 42646034 ~ 42655499 (+) |
| G508537 | NA | non-coding | upstream | 1359 | 42099061 ~ 42099268 (+) |
| G508531 | NA | non-coding | upstream | 7220 | 42093193 ~ 42093407 (+) |
| G508530 | NA | non-coding | upstream | 7744 | 42092621 ~ 42092883 (+) |
| G508499 | NA | non-coding | upstream | 45476 | 42054952 ~ 42055151 (+) |
| G508497 | NA | non-coding | upstream | 48413 | 42051995 ~ 42052214 (+) |
| G508542 | NA | non-coding | downstream | 4034 | 42104868 ~ 42105092 (+) |
| G508554 | NA | non-coding | downstream | 22683 | 42123517 ~ 42124026 (+) |
| G508562 | NA | non-coding | downstream | 24288 | 42125122 ~ 42127597 (+) |
| G508561 | NA | non-coding | downstream | 43217 | 42144051 ~ 42145233 (+) |
| G508558 | LOC106585210 | non-coding | downstream | 44573 | 42145407 ~ 42147244 (+) |
| G507768 | LOC105030512 | other | upstream | 629219 | 41469551 ~ 41471408 (+) |
| fbxl17 | fbxl17 | other | upstream | 1241105 | 40568637 ~ 40886427 (+) |
| G506285 | NA | other | upstream | 1534198 | 40566067 ~ 40566429 (+) |
| G506281 | LOC106585187 | other | upstream | 1553114 | 40544863 ~ 40547513 (+) |
| LOC110525949 | LOC106585178 | other | upstream | 1841577 | 40256994 ~ 40259050 (+) |
| G508559 | dph7 | other | downstream | 28391 | 42129225 ~ 42131940 (+) |
| G509160 | NA | other | downstream | 466271 | 42567105 ~ 42570169 (+) |
| G510416 | NA | other | downstream | 1556634 | 43657468 ~ 43658493 (+) |
| G512192 | LOC106584908 | other | downstream | 3083605 | 45184439 ~ 45185869 (+) |
| LOC110526028 | ccdc60 | other | downstream | 3116893 | 45187119 ~ 45236944 (+) |
