G508554


Basic Information

Item Value
gene id G508554
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42123517 ~ 42124026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU577288
ctacaaTACAcacctaaaatatatttttgctattctgcaaagctgtcatatacataactagctacagtagctaacattagctagataCCTAAACTAGAGGgaccttgctagctagctaccgtacGTCggttatttaaaaaacaaaatcgTTGGAGAATTTGCCCTCAGTATCTTGGTAGAGACTAGAGCGCTAAATTTGCTTCCTACGTTTCTttcatgtaacgttagctaggtgaaTTGTCAACACAGACGCGGAGGAAGAAGCTTGGAAGAAACGTGTCTGTcaactagcaagctagctaacgttagcaacatCCTTGTAAAGATAGCTAACACGACTTAAGGGGGAGGCTTTCATTTGCGAATGACACACTTTTGCAGATTGCAGTCACAAATTAAGACTCACCTAAGAAATGATATCTTGATAGAAACACTGAAACTTGACTAATCTTGTGTCAGCTGTTCGCAGCTACAAACGCACACGCTGTCGCTTGGAAGGGCGCGATCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU577288 True 510 lncRNA 0.41 1 42123517 42124026

Neighbor

gene id symbol gene type direction distance location
htr1aa LOC106585208 coding upstream 349562 41771717 ~ 41773955 (+)
LOC118964870 NA coding upstream 366314 41754679 ~ 41757203 (+)
c7a c7-2 coding upstream 394136 41723173 ~ 41729381 (+)
plcxd3 plcxd3 coding upstream 423396 41678773 ~ 41700121 (+)
oxct1a LOC106580620 coding upstream 445844 41571004 ~ 41677673 (+)
paxx ci142 coding downstream 13027 42137053 ~ 42143608 (+)
LOC110525988 LOC106584966 coding downstream 120479 42244505 ~ 42249266 (+)
stxbp1b LOC106585214 coding downstream 248505 42372531 ~ 42415108 (+)
camsap1b LOC106585218 coding downstream 479282 42603308 ~ 42645904 (+)
LOC110525996 LOC106585219 coding downstream 522008 42646034 ~ 42655499 (+)
G508542 NA non-coding upstream 18425 42104868 ~ 42105092 (+)
G508539 NA non-coding upstream 22683 42100627 ~ 42100834 (+)
G508537 NA non-coding upstream 24249 42099061 ~ 42099268 (+)
G508531 NA non-coding upstream 30110 42093193 ~ 42093407 (+)
G508530 NA non-coding upstream 30634 42092621 ~ 42092883 (+)
G508562 NA non-coding downstream 1096 42125122 ~ 42127597 (+)
G508561 NA non-coding downstream 20025 42144051 ~ 42145233 (+)
G508558 LOC106585210 non-coding downstream 21381 42145407 ~ 42147244 (+)
G508677 LOC106585213 non-coding downstream 195866 42319892 ~ 42332493 (+)
G508717 NA non-coding downstream 247938 42371964 ~ 42372193 (+)
G507768 LOC105030512 other upstream 652109 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 1263995 40568637 ~ 40886427 (+)
G506285 NA other upstream 1557088 40566067 ~ 40566429 (+)
G506281 LOC106585187 other upstream 1576004 40544863 ~ 40547513 (+)
LOC110525949 LOC106585178 other upstream 1864467 40256994 ~ 40259050 (+)
G508559 dph7 other downstream 5199 42129225 ~ 42131940 (+)
G509160 NA other downstream 443079 42567105 ~ 42570169 (+)
G510416 NA other downstream 1533442 43657468 ~ 43658493 (+)
G512192 LOC106584908 other downstream 3060413 45184439 ~ 45185869 (+)
LOC110526028 ccdc60 other downstream 3093701 45187119 ~ 45236944 (+)

Expression


Co-expression Network