G508562


Basic Information

Item Value
gene id G508562
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42125122 ~ 42127597 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU577300
TTACTGGAGCttcattttattatatttttatgtCAGATTCATGGCCGCAATTTATGGAAGATGCCAAAACTTTGGCATTAACAAGCATTAATATAGGGAAAACTCTCTATTGTTATGACAAATCCAGCTTCAAAACCAGCCAGAGGGCCAGATGGCTAAACATTTGAACAGGGTGTAGTAAAACAAAAACAGCAACAacagataacattagctagctagataagattgtgtcacgtcctgaccatagagagcctttattttctatggtggagtaggtcagggcgtgactgcagggttagtctagtttatattttctatgtggggttctaggttgttTTTTCCATGTTGGGGTTTTGGTATGATTCCCATTTAGAGGCCGtatatcgttgtctctaattggggtcacacttaagtagcattttttccacctgtgggttatgggatattgtttatgttttgAGGTAGTATTTtagtcacggttcgttgtttgttagtttattgtttagTCTTTGCTAAAGTTTCACTTCtttaataaattatgtggaactcaatgGTCCGACATTCattataacgatcgtgacagatTGGCATACTAGCTATACTGAGTTGGAACCTAAAAGTGCATCTCGAGGACAGGAAATGACGTTGAAATAGCGGcagagtaaaaaataaaaaataaataaaatgtcagTTTAAACATTaagaaatgttttacatttttcacATCCCTAACAGTTAATTATATTTGGTTTTCAGATTTAACAACATTTCTTAAACCTTAGTTAAACCTTTAATTCCCCCTTCACCTGCAGTTATGGACTGGCCTCTTAAATAAGTCTAGAGACTGAGAtgaccattgcaaaatgttgattttgaaaAACAGAAGCATATGCAGAAAAGTATGTCATACCTATggtgaaatatggtggtggatctttgatgttatggagCTATTTtgtttccactggtcctggggttAAGGTCAACAGCCTTGTTTTGTCAAGAGGTGTGGAAGGGCGGGGAAGGTATCTGCAGTCAGAGAATAAGATCAGGATGCAAATAATATCCACTACCGGTCCAGAAGACATCAGCTAGACAACCAGCATCTTCCAACTCTTGAGGTAAGTTTGCTTTCACTGTGGCTCACCTCAGATGTATATAGGTGGATAAGTGTTCGTAAGTCGGTCCATCCCTGTCACAGAAGACTCGAAATTTGAATTAACCTGGTGTGCTCTCTGTGCTCTCGTAGAGAAAGGCCTGTTGTGCTTAAGGGATGAAGATCCAGATTGCGATACTGCTGTTTGCTCTAGTGAGCATCCCTTTAGCAGCAAGCCTCAACGAAGCTATCCTTAATGAAGGtatgtctagtgtgtgtgtgtgtgagacaggtgAGTGTagtgtctctgtcggtctctggGATGACAAAACAAATGTTGGTCAAGAGGTGAAAAAAGTTACAATTAGAACCTGTAGAGTACTTAAAGCATAAATATGTGCAATTAAGCTCAAATTGTTATCTGTAGCTAAAGTGTTAGGACAACCATAATAGCCATGGAAAAGATCTTTAAGCTGCTTGTTGGTGTACTGTGACATGTGAGATACCTTCCTAACATAGTCATTGTTCTGCTATTATTGTCATAGCAGCTAATCAAACCCTTATTCCAATTGGCACTCCTATGTTGAGTGTTCTGGCGCAAAATGCTGCTTTGCATTATCCAGTTGAGTGTTACACATTGCAGGTGGATGAGATCAGAGACCTAAGGGCCTAGATTCAATCCGTAGCACCAAAGATCCACGCTATTGTGCGATTTAAATtcaaaggcaatgttcccactgCATTCACCCTAAACGGTAAAACACTGCATATGTCGGTTCAATAGAAAATGATCCAGCTATAAGGCAGATCTTCCACACTACAGATTGAATCTAACCCCTTATACCCGCAATTCTAAAAAAAATGTGTTCTATTCAACTGAGACATTTACTTTGTTCATATtcttatattttatattttgcttcttattattgttgcattgtcgagaaggaatctgcaagtaagcatttcgttggacaATGTGTACGTATTACTAATtcaatgcaggaaaactgaaatcagtcttacctcatttctaccagcatctCACGTGTGCAATTAGAGgtgaaaaaaaaactctagatcaactttactccacacacagaaacgcataaagctctccctcgccctccatttggcaaatctgaccataactttaTCTTCCGGATTCTTgcatacaagcaaaaactaaagcaggaagaacCAGTGCAGAGCTCAATACGGAAATGGTccaatgaagcggatgctaagctacaggactgttttgctagcacaaactggaatatgttccaggattcatccgatggcattgaggagtgtaAGTTCTTAGACGACGTCATCCCCAGTGACCATACGTAATTATCACAACCAggaaccatggat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU577300 True 2476 lncRNA 0.39 1 42125122 42127597

Neighbor

gene id symbol gene type direction distance location
htr1aa LOC106585208 coding upstream 351167 41771717 ~ 41773955 (+)
LOC118964870 NA coding upstream 367919 41754679 ~ 41757203 (+)
c7a c7-2 coding upstream 395741 41723173 ~ 41729381 (+)
plcxd3 plcxd3 coding upstream 425001 41678773 ~ 41700121 (+)
oxct1a LOC106580620 coding upstream 447449 41571004 ~ 41677673 (+)
paxx ci142 coding downstream 9456 42137053 ~ 42143608 (+)
LOC110525988 LOC106584966 coding downstream 116908 42244505 ~ 42249266 (+)
stxbp1b LOC106585214 coding downstream 244934 42372531 ~ 42415108 (+)
camsap1b LOC106585218 coding downstream 475711 42603308 ~ 42645904 (+)
LOC110525996 LOC106585219 coding downstream 518437 42646034 ~ 42655499 (+)
G508554 NA non-coding upstream 1096 42123517 ~ 42124026 (+)
G508542 NA non-coding upstream 20030 42104868 ~ 42105092 (+)
G508539 NA non-coding upstream 24288 42100627 ~ 42100834 (+)
G508537 NA non-coding upstream 25854 42099061 ~ 42099268 (+)
G508531 NA non-coding upstream 31715 42093193 ~ 42093407 (+)
G508561 NA non-coding downstream 16454 42144051 ~ 42145233 (+)
G508558 LOC106585210 non-coding downstream 17810 42145407 ~ 42147244 (+)
G508677 LOC106585213 non-coding downstream 192295 42319892 ~ 42332493 (+)
G508717 NA non-coding downstream 244367 42371964 ~ 42372193 (+)
G509060 NA non-coding downstream 291124 42418721 ~ 42418976 (+)
G507768 LOC105030512 other upstream 653714 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 1265600 40568637 ~ 40886427 (+)
G506285 NA other upstream 1558693 40566067 ~ 40566429 (+)
G506281 LOC106585187 other upstream 1577609 40544863 ~ 40547513 (+)
LOC110525949 LOC106585178 other upstream 1866072 40256994 ~ 40259050 (+)
G508559 dph7 other downstream 1628 42129225 ~ 42131940 (+)
G509160 NA other downstream 439508 42567105 ~ 42570169 (+)
G510416 NA other downstream 1529871 43657468 ~ 43658493 (+)
G512192 LOC106584908 other downstream 3056842 45184439 ~ 45185869 (+)
LOC110526028 ccdc60 other downstream 3090130 45187119 ~ 45236944 (+)

Expression


Co-expression Network