G508888


Basic Information

Item Value
gene id G508888
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42142383 ~ 42143840 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU577645
gggggccgaatactttcgcaaggcactgtaactgatgATGGTTGATAGCTAAGTAAGTTTTGACGTGAGTCCTGAATCGTTGGCCTTTTATTTGAAATCACTTTACTAGACTAAGTGAGTCAGAGGAAAGCTGCACCAGATTTCCTCTTTTAAGAGAATGTAACGGAATGATTCTATgttgatgatgatgctgatggtGCCTCCCAAATCTCTAGCCTCTTCATTTGGACACTGTATATTTTTGTCTCGACATGATAATTAGAGCACTTTCTACTGAATGCTGAATTGTGTGCTTCTACAAATCATAATGATTTGTTTCTTTCAACAAGATCCTATGTTGGACACCATGTAATAACTTACTTTACAATGAAGGTAATCAACAAGATAATTTAAGTAATCCAAAAACCGTGAAAAGAACTGAACTTAATAATAATTATATCCTGTAATACCTATAAGAAAGGACACATACAGGATTTACAATAATAAGCATACACTACTGCACTACCATCACTGTGAGAAAAAGAAGTTGAactttctgatcattgtttagttTGTACTTGAGATTGTATGATTTACAAGATGCTTTCAAGTCTGCTGACTATTTCTTTTGGAAGTTGGAGCACATTAGGAATTTTGAAGAACACCCACACCACGTCATTAATGAAGAGAAATGTTTGTCCTGAATATGTATGTTGCCATGTGATTTGAAATGGATATGTTCATGGGGTGTTTGTTTTGTAAAGATATAGTTGTGATCTCTCTTAATTCCTCTCAGAAATTGCTTAAGTTATTTCGTGGACTAATTCTATGTAATTGAACACATTGATTTCTTAATGGGTGACCTATTTGGActtatttgaaaaaaaaaaatatcttgaCTGGGGTGTTTGTTATCCTTTTACTATTAAACAAGGAAACTAATTGTTGTAATTTGTTTTCCTCAGAATGTAAAGTAGGTGAAATGTTTTACTGAAGTCCAGGACAAAATTATGATTTTTCATGTGGACTAATATGAGAATGAGAAACCAAGCCTGTCTTTGAAATGTGTTAATTAATGCTACCTGTATATGTTGGGAGCTGAAAAGCTGTGAGGAAAGATGTAATGAACTTGAGGTTAACTTGTGTCCTTTAACTCAAGGCTAAATGATGACCGTGATGCTCTGCTTTAACTAGAGTTCTGTGACTCTGGACCTCAAAGGAACAGCGATGTGGTTTAGAACCATTTTAGATGGTTTTGATCATTATTTGATCTATTGCAACTGTTGTTGCCACCCAACATCTCTGAATACTTAAACATGTATTTGAAGTTTCCCTGAGCAAAAAAAAGCttgatttaaaaaattaaaaaaaatgtaaaattgaCAAGAACTTATCGTTCAAAGGTctctggagtaaaagtaaaacaaacagttttttttaaacaacaccAGCAAATATGAGAATTGGGTGCAATTCTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU577645 True 1458 lncRNA 0.34 1 42142383 42143840

Neighbor

gene id symbol gene type direction distance location
dph7 dph7 coding downstream 3328 42129218 ~ 42139055 (-)
ipo11 ipo11 coding downstream 18319 41889859 ~ 42124064 (-)
si:dkey-250l23.4 LOC106584965 coding downstream 373172 41759479 ~ 41769211 (-)
rgs7bpa LOC106585207 coding downstream 389423 41735103 ~ 41752960 (-)
c6h5orf51 LOC106585203 coding downstream 571726 41566051 ~ 41570657 (-)
LOC110525987 LOC106585210 coding upstream 2662 42146502 ~ 42241438 (-)
npdc1b LOC106585212 coding upstream 108643 42252483 ~ 42301749 (-)
LOC110525990 LOC106585213 coding upstream 159081 42302921 ~ 42360392 (-)
LOC118964871 NA coding upstream 260999 42404839 ~ 42417077 (-)
LOC110525992 LOC106585216 coding upstream 279571 42422990 ~ 42520495 (-)
G508902 NA non-coding downstream 21992 42120186 ~ 42120391 (-)
G508899 NA non-coding downstream 26641 42115494 ~ 42115742 (-)
G508884 NA non-coding downstream 38869 42103030 ~ 42103514 (-)
G508882 NA non-coding downstream 40233 42101869 ~ 42102150 (-)
G508876 NA non-coding downstream 45383 42096757 ~ 42097000 (-)
G509045 NA non-coding upstream 242233 42386073 ~ 42386706 (-)
G509034 LOC106585214 non-coding upstream 255136 42372441 ~ 42403220 (-)
G509058 NA non-coding upstream 273985 42417825 ~ 42418041 (-)
G509059 NA non-coding upstream 274271 42418111 ~ 42418353 (-)
G508303 NA other downstream 321173 41820855 ~ 41821210 (-)
G507906 selenop other downstream 680461 41421024 ~ 41461922 (-)
znf131 znf131 other downstream 703369 41431651 ~ 41459095 (-)
G507063 NA other downstream 1600054 40540659 ~ 40542329 (-)
G506785 NA other downstream 2252452 39887022 ~ 39889931 (-)
G508891 NA other upstream 257 42144097 ~ 42144885 (-)
G509432 NA other upstream 499679 42643519 ~ 42645869 (-)
G509902 NA other upstream 932852 43076692 ~ 43077157 (-)
G509949 LOC106578716 other upstream 978706 43122546 ~ 43123092 (-)

Expression


Co-expression Network