G508558 (LOC106585210)


Basic Information

Item Value
gene id G508558
gene name LOC106585210
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42145407 ~ 42147244 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU577294
cgaatactttcgcaaggcactgtatttcaaaaTCAATCACAGATCAGATATCTGTCATGTATACatttagaaaataaataattattcttGCCACAgaaaaatatagatatatatacactgtatgacACAACACTAGTTTGACTGGTTTCATGACAGCATGCTCTCAAGGCAGGTAGAGGATTTTAAAGGGGGTTGGGGTGGAATCTCTGGTTGAATAGGAACAGTgagtcccgaatggcaccctattcccttcagtACATGATGCACTACTATTGAACAGAGCCccatgggccatggtcaaaagtagtgcactatataggaaatagggtgtgaTTTAGGATGCAACTTGTACTTTGGCAGGGACGGAACAAATTTCACCAATGTTGAATCACAAATTCACTGCGTCAAACATCTGATAAAAGATTAGACTGAGTAAGGTGGTCATATCAGAAGGAATTATATGATATTTTGTGACATCATCGGCAGTGAATGAAGCCAACTTACCTAGTAGCGACATTAATACCTAATCAGACCTTTTGATTTCAGTCCTTTCTAGATGCACCGCATTGGTTTTCAGTGTTCCCATctatcaatatatataaaaaaaatacatataaacATTCCTATAACAACATATCTCCATTAAAATGCAAGCATTCTCACCGTAGCAGTATGTTTCCCATGACAGAAGACCGATCTCTTCGTCACCTCAGCCTTTAACCATGGCTAACTCTGACAGCTTTGAGAGGCTGACTTCActtctctgtccttctcttctctgtcccacTGTGTCTCCTTCTCCGAGTCCAATGCCTCAGTCTCTGTCACTGTTAGGTGCTTGAGGCTAAAAATTAAATGTATCTTACTTTTCCCTTGGGTAGATAGAGACGGTCCATTCTCTTCCTAGTACATGTAAATCCGTGGAGGCTggcgggaggagctataggaggatggactcattgtaatggctggaattaaatcaatggaatggaatcaaacattccagccattacaatgagccctgcctcctatagctcctcccaccagcctcctctgatgtatatttcctcctctctctttctaatagACACACCCTCTCTGAATTTCCTCCTCCCAATTTGTATATCTAGCCACACCCTCCCTGAGTTTCCTCCTCCCACGTTGTCTGTCCAGCCACGCCCCCTCTCTGAGTTTCCACAGTTCAACAGACAGTATCTGTGTTCAAGGAGAGCTGCACCTGCCATGGAGACATACCGCTGATGAGGCCCTCATCGTCGTCACTCTCCAGTTCCTCCGGCTCTTCGCTGACCAGGGCGCTGAGCTCCGTATTGGCCGGCCGGGGCCTCAGCAGGGTGAGCAGGCGCTGCAGGGGTGACTGGCCTCCACCAGGGGGGGAACTCTCCTGCTGCTCCAGGTTGTCACTTTGCTTCTTGGCAAAGTTCACGAACACCTAGGGAAGGGAGAGAACGCAGAGAAACAAAGACAAGGGGATATAATTTAGACTTTTTATTTTAGATGTTTCAGCTGCAAGGCCTTCCTCAAGTCAACAAACAAACATGAAAGGGAGCAAAAACCGATGTCTGTGCATGTTTTAATAAACATTTAAAATCACCTCATCTGTACTGTCTCAGTGTGGAAATGa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU577294 True 1642 lncRNA 0.44 2 42145407 42147244

Neighbor

gene id symbol gene type direction distance location
paxx ci142 coding upstream 1799 42137053 ~ 42143608 (+)
htr1aa LOC106585208 coding upstream 371452 41771717 ~ 41773955 (+)
LOC118964870 NA coding upstream 388204 41754679 ~ 41757203 (+)
c7a c7-2 coding upstream 416026 41723173 ~ 41729381 (+)
plcxd3 plcxd3 coding upstream 445286 41678773 ~ 41700121 (+)
LOC110525988 LOC106584966 coding downstream 97261 42244505 ~ 42249266 (+)
stxbp1b LOC106585214 coding downstream 225287 42372531 ~ 42415108 (+)
camsap1b LOC106585218 coding downstream 456064 42603308 ~ 42645904 (+)
LOC110525996 LOC106585219 coding downstream 498790 42646034 ~ 42655499 (+)
LOC118964872 NA coding downstream 632017 42779261 ~ 42780791 (+)
G508561 NA non-coding upstream 174 42144051 ~ 42145233 (+)
G508562 NA non-coding upstream 17810 42125122 ~ 42127597 (+)
G508554 NA non-coding upstream 21381 42123517 ~ 42124026 (+)
G508542 NA non-coding upstream 40315 42104868 ~ 42105092 (+)
G508539 NA non-coding upstream 44573 42100627 ~ 42100834 (+)
G508677 LOC106585213 non-coding downstream 172648 42319892 ~ 42332493 (+)
G508717 NA non-coding downstream 224720 42371964 ~ 42372193 (+)
G509060 NA non-coding downstream 271477 42418721 ~ 42418976 (+)
G509061 NA non-coding downstream 272348 42419592 ~ 42421183 (+)
G509062 NA non-coding downstream 274098 42421342 ~ 42422146 (+)
G508559 dph7 other upstream 13467 42129225 ~ 42131940 (+)
G507768 LOC105030512 other upstream 673999 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 1285885 40568637 ~ 40886427 (+)
G506285 NA other upstream 1578978 40566067 ~ 40566429 (+)
G506281 LOC106585187 other upstream 1597894 40544863 ~ 40547513 (+)
G509160 NA other downstream 419861 42567105 ~ 42570169 (+)
G510416 NA other downstream 1510224 43657468 ~ 43658493 (+)
G512192 LOC106584908 other downstream 3037195 45184439 ~ 45185869 (+)
LOC110526028 ccdc60 other downstream 3070483 45187119 ~ 45236944 (+)
G512912 NA other downstream 3488345 45635589 ~ 45636250 (+)

Expression


Co-expression Network