G509034 (LOC106585214)


Basic Information

Item Value
gene id G509034
gene name LOC106585214
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42372441 ~ 42403220 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU577801
ccctgaaaaaactgaacattttagagtggtcgtttattgttcccagcacaaggtgcacctgtgtaatcatcatgctgtttaatcagcttcttgatatgccatacctgtcagatggatggattatcttggcaaaggagaaatgctcaataacaagcatgtaaacaaatttgtacacaaagtttgagagaaatacatttttttgtgagtatggaacatttctgggatcttttatttcaactcatgaaacaagGGACCAACACTTTAGACATGTTGCGATTAATATTTTGGTTCAGCATAAAAACTATCAAATCAAAGTGTTGGGAAATATTGAGGCTGTTCCACTAAGACCTAAAACGAAAAATGTCATTAAGTAATTGGAATCTCAGAAGGTACAGAGCACAGAGGTGATGTAAAATTAATAGGGTTTATCTGTATACCTTGATGGAGCGCTGCTGTGAGTGGATGCAGTGCGTTGGGAGATGTAGGGGTACTGCTTTGGATCCAGTTTGTCCTCAATGGCATCCTCCATGATGTCCTTGATGAGAGGGGTCCATCGGGAGAGCTGGTAGGTCTGCTCACTCACTCGCTCCTTCCGGTCAGTCTTTTTCACTTTGCGGGTCGGGTTCCCCTCTAAGATGATGGGCATGCCCATATGGGCCATGTTGGCGATGATGTCACTGTCCTCAGGAGGGATGTTGGCATGCTGGAGGAGCTTACAGAGGTTCTCCTCCGAAACACCGTTCTTCATGAAGATGTACAGCAGGATTATGCGGATCTTGTCGAAGACAGTGACATCTTTATCCAGCAGGACGGGTACGATGGCCCTCATGGGGTCCTTGATCTTCTCCCCCTCTGCATCTGTACCCATCGCTAGATCCTGCTCAACACGACACAGCTTGTCCACCGTGCCCTGATATCGGTTCATACAGTCTTCAGCCAGGTGGAGGTGGGTAGAGTACTTGCTTAGCTCTTTCTGATACTGCGGCATCTTCTTCAGCATCTGAGACAAGTCTTTCATTGTGGTCTTCTCTCCTGTGTTCATCTTTTTGGTGGCTGAGAATTCTTTGAGGGAGCGGGTCACAGCCGTGGTGACTTCGGCAATATGCTTGTGTCTGAGACTCATCCACAGGTCATCATCCTCATCCAGCAACACCGCCTTCTCCTTGACCTCCCCCATCCCACTGGTGTCAtacTTGTAGACGTCGTTCTCGATGCCCAGCAGGTCATAGCCCATGGCTTGGAGGGTGAGTTCATGGAGGATGGGAGAGACTGGGTCAAAGCCTCGGTCCAGAATCAGGAGTTGAGAGCGAGATTTGTCCGGACCCTCTCCCATGGTGGGGTCGTCTGCCTTGTAGCCGTCTAGCTTGTCCTGCAGGAGCTGAGCCAGAGTGGCACAGTCTTTGTACTCCCCTCTGTATCTGATGCCAGGGTATTCCTTCAGGGTGTTGCAGAGAGTGGCGATCTGCTCAGCACAACGCGCCAACATGTTGTGCTTGATGTCAGCCTTGTAGGGGCTGTAGAAGTCCTGGAAGGCATCTGTCTTGTCCAGGGAAAACACCTGTGACTCATAGGGCAGAAAGGCGATGTGGATCTCAGTCAAGGTCTTCATGGCTTTGGAAGCACGGGATTTTGTCAACAGATTGAACAATGTATCTGGGATTGTGTCAGTGAAGAAGACGTGAGCTCCTCTGTATCTGGGCGACCGCGGGTCTCTGAAGTCATCTATGAGTGCCTCCACAGTCTCATCATTGGGAGTTATTAGGTAGATGGCCTCCATACTGGGGAGAGGCTCTCGCTTCTTGCCAATGTCTTCAACAATGGTGATGCCATCTGACATGATATCTGTCATCTTACAgcaggatgacatcatcctcaTGCTTAGCTTGTCTACTACCAGAACCTTCCATTCGCCCTTCTTGTGCACCTTCTTGATGACATCATTCATAATCTTTTCTCCCACAATGGCTTTAAGTCCGAGTGGTGCCATGGTGATGATGTCTCTGTCGTGGCCGTGTCTCCGCCTCcccttttctttctttccctctctactCTACCCAACCACCGCTAATACTGTGTAGGACTGTAGGCCGCGGGACAACATCCAAAGTGATTGCAGAGGGACCGTATTGCTTCGAAAATAATCCCTTCCACGCCTCCACAAACATGCCGATTTCAAC
>TU577803
GAATAAAGTATTGATCTATTGCAGACTGGGACTTTGTCTAATTCTTCATTAACCAGGGCCTTACAACCTCTGGGAATTGGTCAAAGCTATAGTGATAGTTGAGAAAAACCATTGGGATAAAAATTCTCGTGACAACAACAGCAGGCTGGACTTGCCTCCATGATGTCCTTGATGAGAGGGGTCCATCGGGAGAGCTGGTAGGTCTGCTCACTCACTCGCTCCTTCCGGTCAGTCTTTTTCACTTTGCGGGTCGGGTTCCCCTCTAAGATGATGGGCATGCCCATATGGGCCATGTTGGCGATGATGTCACTGTCCTCAGGAGGGATGTTGGCATGCTGGAGGAGCTTACAGAGGTTCTCCTCCGAAACACCGTTCTTCATGAAGATGTACAGCAGGATTATGCGGATCTTGTCGAAGACAGTGACATCTTTATCCAGCAGGACGGGTACGATGGCCCTCATGGGGTCCTTGATCTTCTCCCCCTCTGCATCTGTACCCATCGCTAGATCCTGGGGTAGGGCAAGACAGTTGGAGGGGCACGGGGAGGATTAGAGGAAGAGAGATCTAACagatatacaaaacattaggaacacctgctctttccatgacaggtgaccaggtgaatccaggtgaaagctatgatcccttattgatgtcacttgttaaatccacttccaatcagtgtagatgaagggaaggagacaggttaaagaaggatttttaagccttgagacaattgagtaatggattgtgtatgtatgccattcagagggtgaatgggaaaacAAAATATTCAAGTCCCTTTGAACATGGTATGctagtagatgccaggcgcaccggtttgagtgtgtcaacaagtgcaacgctgctgggtttcacgctcaacagtttcccatgtgtatcaagaatggtccaaccaCCACCTGCACGCTGACACTACAGTCAAATGGATATAAAGAACTCACTAAAGACTAAAGGAAATGGAAGTCATGACTCATGCTATGTCGTGAAGGAATTATTTCGTTTCTTGTTAAGTTCCCTCTTCTTGTCCCTATTAAGTATGCTGCACGACTATGGACTTCAACGGGATATTAATTATTGGCAGAGGTAGCCTAACGGTGACTATTACTGGTCACATGTCACGTCATTCAAACGGGAGAATATAGGCTAACTGCATATACATTCTTTGTGTTGATGAAAATATTATATGACTAATCATAGATCCGATTTATTTGTAATTGTTTTTTCAATTATTATTTTGGAGTTGGGTTTGTAGGTGCGCTCGTCTCCATGCCAGTCGGGTCGGCCGGCCGGGTTGGGTCTCTCCCGGGTCCTTGGAAAATCCCTTTGGTCGAGGGCAGGGGCCTCCACCGACCAGTGGCTCGAGAGCACCTACCTGTAGCGGTTTGTATGGGTCTATTCTGTTTGGATTTTCACATTGATGTGGTGACTGGGTGCCTGTCCACTTTCAGCATAAAGATTCCAAATTCCAAagatccctctcttttcctcctcatAAAGGATTCAATTTATTAGCCGTATGTTTTTTATGTTGGTGCTGAGAACTCAGTTGGGGAAAATGACTAAAGCTGGTCCATCATAATATGGCCCGAATAATCAGGATTGATAGATTAATGTGCCACTATAGCCTCGCCCTGGCTCTCAGACTGGGATTCAAATATTGAGAGGTGGTTCTGTTCTGTAGACCGTACCAGGGTAGCTAAAAGGGTAGCTAAAATAAAATCTAAACGTTTATTTGGACTAATGAACGCAATGGAAGATGCTCATAGGAGACGATGGCCTAGACAACGTTAAATGTATCTCCAAATGCGGTCAATATATCGTCGCTTTTTCAATTTTCAATGGGTTACCTTAAGCATGGTTTCATACGTAGTGAACATAATTTAAGGTTAGAAATGGGGAGGATTGAACGGTTTGGTGAAGAATAATGATTTCCATTTTCAAGACTCCACCTCCCATGTGGCTTGACCAATCAGTATAACGTACTGATTCAGTCTTTGTCAGGTGTTTTTATTCTGTTATGTAATGTTGGCTGTATACGGTGTGTTTATGTTTTTCTTTATCTTAATGTTGTCCAAACGTGAAATATTCTCAGATGGTTCTCATTGCTCTTTCATTGCATGTTGCGAATCCTGTAACAACAGCAAACCCCAATGAGTGATTTAAAAAACAACTACTATTCATTTGAAAGGAATTCATTTGCCTATCAAATGTACAAAAGTATTGGCtcagtttaaaaaaagaaaaggtaCACAGAAAAGGTATAGGACGTCCTCCAAACAGCCCTTTTAAAGAATTACAAGCTGCAAGATCAGCATTAAACCAACGGTTTACAGACAAAGCAGAAGCATCTATTTCCCAGTCTGGGCACAGATTATAGGAACATGAAAATAAGACAAGTCGACTGGCAAAGAAGAGAACTTCACCAGACGCTATACTTTCAATTAAAAGGATCAAACTACTGACTCCAGCAATCATCTGGCTGACGTACAACACTTTCTCGATAAACTATGTCTCTCCCAACAATACATGTGGGAGACAGATAATTATTATGCAAGGAGATATCCAAAGACGAAATACAAGAGATGATTCAAACCCTTAAAGATGGGGAAACCCCCAGGACATGATGGGTTTGGACCAGAGTTTTATCGGAATGGTGAAGGTTTCATAACGGAACCCCTTCTCAAAATGTATAC

Function

NR:

description
syntaxin-binding protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU577801 False 2177 TUCP 0.48 17 42372441 42403220
TU577803 True 2717 lncRNA 0.43 3 42398976 42402230

Neighbor

gene id symbol gene type direction distance location
LOC110525990 LOC106585213 coding downstream 38584 42302921 ~ 42360392 (-)
npdc1b LOC106585212 coding downstream 97227 42252483 ~ 42301749 (-)
LOC110525987 LOC106585210 coding downstream 157538 42146502 ~ 42241438 (-)
dph7 dph7 coding downstream 259921 42129218 ~ 42139055 (-)
ipo11 ipo11 coding downstream 274912 41889859 ~ 42124064 (-)
LOC118964871 NA coding upstream 2609 42404839 ~ 42417077 (-)
LOC110525992 LOC106585216 coding upstream 21181 42422990 ~ 42520495 (-)
noxa1 noxa1 coding upstream 137634 42539864 ~ 42549214 (-)
LOC110525994 LOC106585220 coding upstream 174299 42576529 ~ 42587286 (-)
LOC110525997 LOC106585221 coding upstream 252754 42654984 ~ 42729594 (-)
G509045 NA non-coding downstream 12270 42386073 ~ 42386706 (-)
G508888 NA non-coding downstream 255136 42142383 ~ 42143840 (-)
G508902 NA non-coding downstream 278585 42120186 ~ 42120391 (-)
G508899 NA non-coding downstream 283234 42115494 ~ 42115742 (-)
G508884 NA non-coding downstream 295462 42103030 ~ 42103514 (-)
G509058 NA non-coding upstream 15595 42417825 ~ 42418041 (-)
G509059 NA non-coding upstream 15881 42418111 ~ 42418353 (-)
G509281 NA non-coding upstream 17053 42419283 ~ 42420286 (-)
G508891 NA other downstream 254091 42144097 ~ 42144885 (-)
G508303 NA other downstream 577766 41820855 ~ 41821210 (-)
G507906 selenop other downstream 937054 41421024 ~ 41461922 (-)
znf131 znf131 other downstream 959962 41431651 ~ 41459095 (-)
G507063 NA other downstream 1856647 40540659 ~ 40542329 (-)
G509432 NA other upstream 241289 42643519 ~ 42645869 (-)
G509902 NA other upstream 674462 43076692 ~ 43077157 (-)
G509949 LOC106578716 other upstream 720316 43122546 ~ 43123092 (-)
G509952 NA other upstream 722351 43124581 ~ 43125387 (-)
G510310 NA other upstream 1121484 43523714 ~ 43524108 (-)
G508882 NA non-coding downstream 270291 42101869 ~ 42102150 (-)

Expression


Co-expression Network