G509061


Basic Information

Item Value
gene id G509061
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42419592 ~ 42421183 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU577830
GGCTTCATCTTACATTCCAGTGTTCAAACCTTTTTAagaaggctgcatgggatttttCTTAATGCGGCTCCATGCAGCCAACggcaatgtccgctttaggtGTAATGCCAAAAGCCGCTTGTGGATTTCACAGCTCTAACGCAGCTCCACCCccgacaccgccaaaacaaccCCTATGCAGATGTcggatctgattgaatagagtCCTAAGGTTTTAGTGCAGTAAGCATTTGGTTATGATTGTACACCTCTAATATTGTGTCAGCGCTGTAGTAGTGAGATGCACTATGTTACTATGATATGCTGCTACAGCTATAGTGCTGCAACATTAGCCTGGTCCTAGACCTGTTTGtgcttttttttgttgtaaaatgGGTATTACGTTTATTTGGCAGGGACAACGCACAACAAAAACATAAGTCTCAAACCACTGAGAATTGATGTGTCGCACCAGATTTTGCTTTCAGCTACTTTCCATCCGTAGCCAAATCCCttgctgtcattgtcaagccaaacattgCCATGACAATGAATGACAGGGAGCtggcatgatagcacaaacagactggcactcaggctactaAAACATTGTCCAGCATGATTTCTTTTTTACAATACAGCCTACTCTTGGGTAACAGACGGCCGGCACAGAACAAAAAaaagaacaacaaaaaaaaggcaAATTGACTGACAATGTATTACCTATAGCAGGTGAGGGTGTTGTAATGTTACATCACTTTTATCTTTGCACCAAAACGATGCAAATACTCACGGTAAACAGTGTGTGACATCAGTTTAaatataattgtatttgtcacatgcgccgaatacaacatgtctAGACTttgccatgaaatgcttacttacgagccctttcccaacaatgcaaagttaaaaagtaagaaaagttagcaaaagaaagaaaggaaacagtaacacaaaatatcaataatgaggctatatacaaggagtaccggtaccgagtcaatgtgcagggacatTTAGTTGACAATATAGCAAGATGAAAAACCCAATGTAAACCTAAAGTAGACTATTTTACAAGTCTGCTGCATCATGGCTGcgttttacacaggcagcccaattctgatcttttgcccagtTATTGGCAAAAGTGCTGATCTGATAGGAGGAAAAACCAATTAGTCAAAAAAAGATCCGAATTGGGCAGCCTGTGTAAACCGGGCCAAGATGCAGCAGACTTGTAAATAGTCTACTTTAGATTTACATTTCATCTGACTGTATTGTCAACTGATGTTCACATACTGTTACTGTGAGTATTTGTAAATCTTGGAATTATTTTGGTGCAAAGTGCCAAAAGGTGATGTAGCATTACATCACCCTCACCTGCTATAGGTAATGCATTGTATgtggtcaatcaatcaataccCAACTGGAACCTGAGCAAATACACTGAGCAACTAGTCGAATGAGAGCTACTGTAGAATGTGACAGCAAACACAGGAATAATACAGTGATATTGTTTCTAGTTGTGTGATACTTTCAAACAGTCATGTAATCCGTCTATAAATCTATTtacagcatatacagtgcattcagaaagtattcagacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU577830 True 1592 lncRNA 0.40 1 42419592 42421183

Neighbor

gene id symbol gene type direction distance location
stxbp1b LOC106585214 coding upstream 4484 42372531 ~ 42415108 (+)
LOC110525988 LOC106584966 coding upstream 170326 42244505 ~ 42249266 (+)
paxx ci142 coding upstream 275984 42137053 ~ 42143608 (+)
htr1aa LOC106585208 coding upstream 645637 41771717 ~ 41773955 (+)
LOC118964870 NA coding upstream 662389 41754679 ~ 41757203 (+)
camsap1b LOC106585218 coding downstream 182125 42603308 ~ 42645904 (+)
LOC110525996 LOC106585219 coding downstream 224851 42646034 ~ 42655499 (+)
LOC118964872 NA coding downstream 358078 42779261 ~ 42780791 (+)
LOC110525999 LOC106585222 coding downstream 389131 42810314 ~ 42825158 (+)
LOC118965026 LOC106585222 coding downstream 408628 42829811 ~ 42836106 (+)
G509060 NA non-coding upstream 616 42418721 ~ 42418976 (+)
G508717 NA non-coding upstream 47399 42371964 ~ 42372193 (+)
G508677 LOC106585213 non-coding upstream 87099 42319892 ~ 42332493 (+)
G508558 LOC106585210 non-coding upstream 272348 42145407 ~ 42147244 (+)
G508561 NA non-coding upstream 274359 42144051 ~ 42145233 (+)
G509062 NA non-coding downstream 159 42421342 ~ 42422146 (+)
G509064 NA non-coding downstream 7122 42428305 ~ 42428596 (+)
G509068 NA non-coding downstream 11178 42432361 ~ 42432614 (+)
G509070 NA non-coding downstream 15031 42436214 ~ 42436446 (+)
G509077 NA non-coding downstream 21183 42442366 ~ 42442584 (+)
G508559 dph7 other upstream 287652 42129225 ~ 42131940 (+)
G507768 LOC105030512 other upstream 948184 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 1560070 40568637 ~ 40886427 (+)
G506285 NA other upstream 1853163 40566067 ~ 40566429 (+)
G506281 LOC106585187 other upstream 1872079 40544863 ~ 40547513 (+)
G509160 NA other downstream 145922 42567105 ~ 42570169 (+)
G510416 NA other downstream 1236285 43657468 ~ 43658493 (+)
G512192 LOC106584908 other downstream 2763256 45184439 ~ 45185869 (+)
LOC110526028 ccdc60 other downstream 2796544 45187119 ~ 45236944 (+)
G512912 NA other downstream 3214406 45635589 ~ 45636250 (+)

Expression


Co-expression Network