G509164


Basic Information

Item Value
gene id G509164
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42578219 ~ 42588368 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU577942
CCTTATTGCAAAGAGttgatcaggctgttgactgtggcctgtggaatgttgtcccactcctcttcagtggctttgcgaagttgctgaatattggcgggaactggaacatgctgtcgtacacgtcaatccagagcatcccaaacatgctcaatgggtgagtatgtaggccatggaagaactgggacattttcagcttccaggaattgtgtacagatccttgtgacatggggccgtgcattatcatgctgaaagatGAAGGGATGgcggcacgacaatgggcctcaggatctcgtcacggtatctcacggtattcaaattgccatcaataaaatgcaattgtgctcaatgtccgtagcttatgcctgctcataccataaccctactgccaccatggggcactatgttcacaacgttgacat

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU577942 True 419 lncRNA 0.48 2 42578219 42588368

Neighbor

gene id symbol gene type direction distance location
stxbp1b LOC106585214 coding upstream 163111 42372531 ~ 42415108 (+)
LOC110525988 LOC106584966 coding upstream 328953 42244505 ~ 42249266 (+)
paxx ci142 coding upstream 434611 42137053 ~ 42143608 (+)
htr1aa LOC106585208 coding upstream 804264 41771717 ~ 41773955 (+)
LOC118964870 NA coding upstream 821016 41754679 ~ 41757203 (+)
camsap1b LOC106585218 coding downstream 14940 42603308 ~ 42645904 (+)
LOC110525996 LOC106585219 coding downstream 57666 42646034 ~ 42655499 (+)
LOC118964872 NA coding downstream 190893 42779261 ~ 42780791 (+)
LOC110525999 LOC106585222 coding downstream 221946 42810314 ~ 42825158 (+)
LOC118965026 LOC106585222 coding downstream 241443 42829811 ~ 42836106 (+)
G509163 NA non-coding upstream 1321 42576553 ~ 42576898 (+)
G509161 NA non-coding upstream 4820 42570559 ~ 42573399 (+)
G509148 NA non-coding upstream 28993 42548231 ~ 42549226 (+)
G509080 NA non-coding upstream 132782 42445230 ~ 42445437 (+)
G509078 NA non-coding upstream 134896 42443114 ~ 42443323 (+)
G509252 NA non-coding downstream 141552 42729920 ~ 42730149 (+)
G509256 NA non-coding downstream 146226 42734594 ~ 42734857 (+)
G509260 NA non-coding downstream 153646 42742014 ~ 42743213 (+)
G509266 NA non-coding downstream 161663 42750031 ~ 42750268 (+)
G509160 NA other upstream 8050 42567105 ~ 42570169 (+)
G508559 dph7 other upstream 446279 42129225 ~ 42131940 (+)
G507768 LOC105030512 other upstream 1106811 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 1718697 40568637 ~ 40886427 (+)
G506285 NA other upstream 2011790 40566067 ~ 40566429 (+)
G510416 NA other downstream 1069100 43657468 ~ 43658493 (+)
G512192 LOC106584908 other downstream 2596071 45184439 ~ 45185869 (+)
LOC110526028 ccdc60 other downstream 2629359 45187119 ~ 45236944 (+)
G512912 NA other downstream 3047221 45635589 ~ 45636250 (+)
LOC110526042 LOC106584891 other downstream 3598632 46076084 ~ 46190292 (+)

Expression


Co-expression Network