G509260


Basic Information

Item Value
gene id G509260
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42742014 ~ 42743213 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU578049
cagcagaaccgcaatagagacagaggcggttggtgattctccgttccctctccttagtcgagatgcggatacctcccagctgcataggctcagcacccgagccggcagaggaagatggtagtgatgcggagaggggggcaacggagaacgcgagctcctttccacgagctcggtgacgaagatcaacccgtcgctcaatgcgaatagcgagttcaatcaaggaatccacgctggaaggaacctcccgggagagaatctcatcctttaccactgcgcggagaccctccagaaaacgagcgagcaaagccggctcgttccagccactggaggcagcaagagtgcgaaactcaatagagtagtctgttatggatcgattaccctgacatagggaagacagggccctggaagcctcctccccaaaaacagatcgatcaaaaacccgtatcatctcctccttaaagtcctgatactggttagtacactcagcccttgcctcccagattgccgtgccccactcacgagcccgtccagtaaggagagatatgacgtaggcgacacgagcagtgctcctggagtaagtgttgggctggagagaaaacacaatatcacactgggtgaggaacgagcggcattcagtgggctccccagagtaacacggcgggttattgattctgggctccggagattcgaaagccctggaagtggccggtggatcgaggcggagatggtgaacctgttctgtgaggttggagacttgggtggccagggtctcaacggcatgtcgagcagcagacaattcctgcttgtgtctgcctagcatcgctccctggatctcgacggctgagtggagaggatccgaagtcgctgggtccattcttggtcggattcttctgtcaggtgcgtgaatgaggaccgaaaagcgaattaacaaacagagtttctttaatgatgaacacacgtgggctcagatggacaggtagattccgacaggacaggacaaggttgcagcaaacacgatgatagtctggttcaggcatgagacacacaaacaagaatccgacaaagacaggagcagaaacagagagagatatagaggactaatcagagggaaaaagggaacaggtgggaaaaggggtgacgaggtagttaggaggagacaaggcacagctgggggaaagagggggagaaaaggtaacctaa

Function

NR:

description
PREDICTED: protein LDOC1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU578049 True 1200 lncRNA 0.54 1 42742014 42743213

Neighbor

gene id symbol gene type direction distance location
LOC110525996 LOC106585219 coding upstream 90286 42646034 ~ 42655499 (+)
camsap1b LOC106585218 coding upstream 96110 42603308 ~ 42645904 (+)
stxbp1b LOC106585214 coding upstream 326906 42372531 ~ 42415108 (+)
LOC110525988 LOC106584966 coding upstream 492748 42244505 ~ 42249266 (+)
paxx ci142 coding upstream 598406 42137053 ~ 42143608 (+)
LOC118964872 NA coding downstream 36048 42779261 ~ 42780791 (+)
LOC110525999 LOC106585222 coding downstream 67101 42810314 ~ 42825158 (+)
LOC118965026 LOC106585222 coding downstream 86598 42829811 ~ 42836106 (+)
col27a1b LOC106585224 coding downstream 110574 42853787 ~ 42992257 (+)
LOC118965079 NA coding downstream 280650 43023780 ~ 43024698 (+)
G509256 NA non-coding upstream 7157 42734594 ~ 42734857 (+)
G509252 NA non-coding upstream 11865 42729920 ~ 42730149 (+)
G509164 NA non-coding upstream 153646 42578219 ~ 42588368 (+)
G509163 NA non-coding upstream 165116 42576553 ~ 42576898 (+)
G509266 NA non-coding downstream 6818 42750031 ~ 42750268 (+)
G509267 NA non-coding downstream 8195 42751408 ~ 42751614 (+)
G509272 NA non-coding downstream 13553 42756766 ~ 42756971 (+)
G509500 NA non-coding downstream 22907 42766120 ~ 42766348 (+)
G509697 NA non-coding downstream 227343 42970556 ~ 42970917 (+)
G509160 NA other upstream 171845 42567105 ~ 42570169 (+)
G508559 dph7 other upstream 610074 42129225 ~ 42131940 (+)
G507768 LOC105030512 other upstream 1270606 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 1882492 40568637 ~ 40886427 (+)
G506285 NA other upstream 2175585 40566067 ~ 40566429 (+)
G510416 NA other downstream 914255 43657468 ~ 43658493 (+)
G512192 LOC106584908 other downstream 2441226 45184439 ~ 45185869 (+)
LOC110526028 ccdc60 other downstream 2474514 45187119 ~ 45236944 (+)
G512912 NA other downstream 2892376 45635589 ~ 45636250 (+)
LOC110526042 LOC106584891 other downstream 3443787 46076084 ~ 46190292 (+)

Expression


Co-expression Network