G509741


Basic Information

Item Value
gene id G509741
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43040908 ~ 43046262 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU578546
gtagaataagggtgcggctaaaagcaataagaattggtcgtttagaacgtctggaacagagagtaaaaggaggtttctggggtcgataaaatagcatcaaggtataatgtacagacaaaggtaaggtaggatgtgaatacagtggaggtaaacctaggtattgagtgatgaagagagagatattgtctctagaaacatcattgaaactaggagatgtcattgcatgtgtgggtggtggaactaataggttggataaggtataatgagcaggactagaggctctacagtgaaataagccaataaacactaaccagaacagcaatggacaaggcatattgacattaaggagaggcatgctcagtcgagtaatcaaaagggtccagtgagtggagaggttggttgggggtcacggcgatttagacagctaaatcggtagcaagctagcataggagcaagctagcataggatggaggtctgttgttagccaactcttgcgttccgtcagtagattagtgggtttccgtgtggtagaggggattaatccaaatcacacaacaacaacaaaaataaaaacaatagatatagttatagaggcccaagaagaaaaataaataaataaaaaataaaataaaataaaaattgtccgattgtctattcagatagcagccgataagatagccaacggctagcaggccgcagatgggcgcccaggcaacgttgcgccggaggagccagccggacaactccctcgggtagacaacgtcggcagtccagccgtgaaggcccggtggggctccgcgtaggcagcaaaacgggtccggataggtgactgcagcccaggagtgattgatggaactcttcagctggctagctccggaacaattgatgttagctccggaatcgacgaaagccgatagtcacacggat
>TU578547
gtagaataagggtgcggctaaaagcaataagaattggtcgtttagaacgtctggaacagagagtaaaaggaggtttctggggtcgataaaatagcatcaaggtataatgtacagacaaaggtaaggtaggatgtgaatacagtggaggtaaacctaggtattgagtgatgaagagagagatattgtctctagaaacatcattgaaactaggagatgtcattgcatgtgtgggtggtggaactaataggttggataaggtataatgagcaggactagaggctctacagtgaaataagccaataaacactaaccagaacagcaatggacaaggcatattgacattaaggagaggcatgctcagtcgagtaatcaaaagggtccagtgagtggagaggttggttgggggtcacggcgatttagacagctaaatcggtagcaagctagcataggagcaagctagcataggatggaggtctgttgttagccaactcttgcgttccgtcagtagattagtgggtttccgtgtggtagaggggattaatccaaatcacacaacaacaacaaaaataaaaacaatagatatagttatagaggcccaagaagaaaaataaataaataaaaaataaaataaaataaaaattgtccgattgtctattcagatagcagccgataagatagccaacggctagcaggccgcagatgggcgcccaggcaacgttgcgccggaggagccagccggacaactccctcgggtagacaacgtcggcagtccagccgtgaaggcccggtggggctccgcgtaggcagcaaaacgggtccggataggtgactgcagcccaggagtgattgatggaactcttcagctggctagctccggaacaattgatgttagctccggaatcgacgaaagccgatagtcacacggat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU578546 False 927 lncRNA 0.46 2 43040908 43046262
TU578547 True 927 lncRNA 0.46 2 43040908 43046262

Neighbor

gene id symbol gene type direction distance location
LOC118965079 NA coding upstream 16210 43023780 ~ 43024698 (+)
col27a1b LOC106585224 coding upstream 48677 42853787 ~ 42992257 (+)
LOC118965026 LOC106585222 coding upstream 204802 42829811 ~ 42836106 (+)
LOC110525999 LOC106585222 coding upstream 215750 42810314 ~ 42825158 (+)
LOC118964872 NA coding upstream 260117 42779261 ~ 42780791 (+)
LOC110526005 LOC106585229 coding downstream 909915 43937835 ~ 43981885 (+)
LOC118964874 NA coding downstream 946571 43992833 ~ 43995155 (+)
LOC110526008 NA coding downstream 1212834 44259096 ~ 44260124 (+)
LOC110526009 LOC106585233 coding downstream 1238590 44284852 ~ 44295238 (+)
LOC110526012 LOC106585234 coding downstream 1249352 44295614 ~ 44309360 (+)
G509736 NA non-coding upstream 12180 43028529 ~ 43028728 (+)
G509734 NA non-coding upstream 14465 43026167 ~ 43026443 (+)
G509719 NA non-coding upstream 38899 43001732 ~ 43002009 (+)
G509763 NA non-coding downstream 27832 43074094 ~ 43074733 (+)
G509922 NA non-coding downstream 46986 43093248 ~ 43093475 (+)
G509923 NA non-coding downstream 47481 43093743 ~ 43094013 (+)
G509924 NA non-coding downstream 47959 43094221 ~ 43094515 (+)
G509930 NA non-coding downstream 61943 43108205 ~ 43108491 (+)
G509160 NA other upstream 470739 42567105 ~ 42570169 (+)
G508559 dph7 other upstream 908968 42129225 ~ 42131940 (+)
G507768 LOC105030512 other upstream 1569500 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 2181386 40568637 ~ 40886427 (+)
G506285 NA other upstream 2474479 40566067 ~ 40566429 (+)
G510416 NA other downstream 611206 43657468 ~ 43658493 (+)
G512192 LOC106584908 other downstream 2138177 45184439 ~ 45185869 (+)
LOC110526028 ccdc60 other downstream 2171465 45187119 ~ 45236944 (+)
G512912 NA other downstream 2589327 45635589 ~ 45636250 (+)
LOC110526042 LOC106584891 other downstream 3140738 46076084 ~ 46190292 (+)

Expression


Co-expression Network