G509931



Basic Information


Item Value
gene id G509931
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43108775 ~ 43112219 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU578746
gtggacaagagtccatcagtcaattagatatcattctgaccaccaaactgatacaaactgacaccaaacccactttttccaactcgtttagtagccaactattacatacttcagagctggcccaaaaatcacaacgccttcggttcaaaccataaaaaaaccataaaacacgtagttacgttctagctgcgggtccatttcttatgttatgtgttggcctagctgaggcgaccccgaatcccaagtttcggctcgataggtcatttggtgtccgagaaaaaccctaattggtgctgaaaatccactattttccatgacttgctacggggtccttgaatgagctatcggacagaaacgttggggtctgtctatatgggccgagacgttcgcaatgcacctagtcttgcgactctgggacatttctaaatgtcgtcattttcgtgatgcaaaaatgaattgaagttattgcaaatgtacgaggctgtttctcggtccgagaaccttctagagccacgtaactcaccacgcaccatcgacgggaggtctagaacaggtttctaaagtttcggaactctaggtctgacggttcttttttagctccaacaaagctaactattgcagccactgtctgtctctacgcaccccctccttccaagttgtgttttagtgtgattttttttcctttgaatttttttgggaaaaatgactgatttacagttcatgggggttgcctaatcacacatatgaagttttggaaagatcagacttttttaacccttcgaaacagcccctgagacaccaattatggcacgtccggttggcacaggaagttataaatcaacacatatcctcattggggtatgctgttacagaatcctgagttttaagtccttacgttaagaactgactgatttacacaggcttgaatgcactatgtctatcaaactgcaggcagggtatgggtaaacacttttagggtgattttaaccacttccggttggtccaggaagcttagattcgacacaggtagacctcatagtggcctgatggactggtaccgaagacaggttcatacggcattcataacccatataggcttttgtggtgcaggctatgtattcctatggggagagatgtcactgtaatctgtgagatcaaaaaaccctgttttact

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU578746 True 1174 lncRNA 0.44 2 43108775 43112219
Loading

Neighbor


gene id symbol gene type direction distance location
LOC118965079 NA coding upstream 84077 43023780 ~ 43024698 (+)
col27a1b LOC106585224 coding upstream 116544 42853787 ~ 42992257 (+)
LOC118965026 LOC106585222 coding upstream 272669 42829811 ~ 42836106 (+)
LOC110525999 LOC106585222 coding upstream 283617 42810314 ~ 42825158 (+)
LOC118964872 NA coding upstream 327984 42779261 ~ 42780791 (+)
LOC110526005 LOC106585229 coding downstream 843958 43937835 ~ 43981885 (+)
LOC118964874 NA coding downstream 880614 43992833 ~ 43995155 (+)
LOC110526008 NA coding downstream 1146877 44259096 ~ 44260124 (+)
LOC110526009 LOC106585233 coding downstream 1172633 44284852 ~ 44295238 (+)
LOC110526012 LOC106585234 coding downstream 1183395 44295614 ~ 44309360 (+)
G509930 NA non-coding upstream 284 43108205 ~ 43108491 (+)
G509924 NA non-coding upstream 14260 43094221 ~ 43094515 (+)
G509923 NA non-coding upstream 14762 43093743 ~ 43094013 (+)
G509922 NA non-coding upstream 15300 43093248 ~ 43093475 (+)
G509763 NA non-coding upstream 34042 43074094 ~ 43074733 (+)
G509948 LOC106578716 non-coding downstream 10286 43122505 ~ 43123620 (+)
G509968 NA non-coding downstream 27391 43139610 ~ 43139843 (+)
G509971 NA non-coding downstream 29389 43141608 ~ 43141901 (+)
G509975 NA non-coding downstream 30910 43143129 ~ 43143365 (+)
G509985 NA non-coding downstream 37991 43150210 ~ 43150470 (+)
G509160 NA other upstream 538606 42567105 ~ 42570169 (+)
G508559 dph7 other upstream 976835 42129225 ~ 42131940 (+)
G507768 LOC105030512 other upstream 1637367 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 2249253 40568637 ~ 40886427 (+)
G506285 NA other upstream 2542346 40566067 ~ 40566429 (+)
G510416 NA other downstream 545249 43657468 ~ 43658493 (+)
G512192 LOC106584908 other downstream 2072220 45184439 ~ 45185869 (+)
LOC110526028 ccdc60 other downstream 2105508 45187119 ~ 45236944 (+)
G512912 NA other downstream 2523370 45635589 ~ 45636250 (+)
LOC110526042 LOC106584891 other downstream 3074781 46076084 ~ 46190292 (+)

Expression


G509931 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

G509931 Expression in each Bioproject

Bar chart with 19 bars.
G509931 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network