G509948 (LOC106578716)


Basic Information

Item Value
gene id G509948
gene name LOC106578716
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43122505 ~ 43123620 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU578765
CGGGCTGGACCGGTTTACTTGAGGAGTTGTCTGGAGAATCACGCACATAATATGTTTTCAGCATGTTAACATGACACACACGGGAAGAACGCCTTCGATCTGGTGTCTTTATCACATAATTGGTGTCATTGATTTTCTTTTCCACCAGATATGGTCCAGAAAAACGTGCTGACAGAGATGAGCCAGGGATTGGCAACAAAACTAAAACTTGATCCCCTGGTGCAAATGAACGGCCAACAGCCTTTTTGTCATAATGCAACTTCATGCGTTtttgagacgaggagagagactttTGGGCTAACGCACATGCGGCGTGCAGTCTCTCCCGCATCTTACTGACATATTCCAACACATTTTTAGGGGCGCTACTGGGTGTAGGAGATAAGatatgctccttcaaaactttaAGCGGACCCCGTGGGGTGTGTCCAAACACAAGGTCAGCAGGGCTGAACCCTAAGGACTCTTGTATCGTTTCCCTTATAGCAAATAGGACAAAGGGCACCCCCTCATCCCAATCAGTACTGGTATCCATACAATACTTGCGTAGCATTGCCTTCAGCGTCTGATGCCAGCGTTCTAGAGCCCCTTGAATCTCTGGATGATACGGACTAGAGACCTGATGGGAAATACACAATGTCTTTAACACATTTGAAAACAGTTTAGACATGAAGTTGGATCCCTGATCAGTTTGGATTACTTTAGGGAGTCCAAACGTAGAGAAGAACTTCACTAGTGCCTTCACCACAGTCTTAGCCGTTATAGTACGGAGAGGAATAGCCTCTGGGTATCGAGTAGCACTGCACATTATTGTTAGTAGGAACTGGTTACCTGACCTTGTTTTCGGCAATGGACCTACACAATCAATTATCACTCTTTCAAACGGTTCCCCCACCACAGGAATCGGGCAGAGTGGCGCTCGTGGAACTGTTTGATTCACTTTCCCAGTGAGTTGACATATGTGACATGTTTTACAAAATTGGACCACGTCAGACTTCAAACCTGGCCAGAAGAAATGACGAAGGACCCGGTTATAAGTCTTTGTGATCCCCAGGTGTCCAGACCACGCCTGGTCATGGGCGAGTGACAGCACCTGCTGTCGGAATGGTGTAGGAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106570150

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU578765 True 1116 lncRNA 0.47 1 43122505 43123620

Neighbor

gene id symbol gene type direction distance location
LOC118965079 NA coding upstream 97807 43023780 ~ 43024698 (+)
col27a1b LOC106585224 coding upstream 130274 42853787 ~ 42992257 (+)
LOC118965026 LOC106585222 coding upstream 286399 42829811 ~ 42836106 (+)
LOC110525999 LOC106585222 coding upstream 297347 42810314 ~ 42825158 (+)
LOC118964872 NA coding upstream 341714 42779261 ~ 42780791 (+)
LOC110526005 LOC106585229 coding downstream 832557 43937835 ~ 43981885 (+)
LOC118964874 NA coding downstream 869213 43992833 ~ 43995155 (+)
LOC110526008 NA coding downstream 1135476 44259096 ~ 44260124 (+)
LOC110526009 LOC106585233 coding downstream 1161232 44284852 ~ 44295238 (+)
LOC110526012 LOC106585234 coding downstream 1171994 44295614 ~ 44309360 (+)
G509931 NA non-coding upstream 10286 43108775 ~ 43112219 (+)
G509930 NA non-coding upstream 14014 43108205 ~ 43108491 (+)
G509924 NA non-coding upstream 27990 43094221 ~ 43094515 (+)
G509923 NA non-coding upstream 28492 43093743 ~ 43094013 (+)
G509922 NA non-coding upstream 29030 43093248 ~ 43093475 (+)
G509968 NA non-coding downstream 15990 43139610 ~ 43139843 (+)
G509971 NA non-coding downstream 17988 43141608 ~ 43141901 (+)
G509975 NA non-coding downstream 19509 43143129 ~ 43143365 (+)
G509985 NA non-coding downstream 26590 43150210 ~ 43150470 (+)
G509996 NA non-coding downstream 33008 43156628 ~ 43156859 (+)
G509160 NA other upstream 552336 42567105 ~ 42570169 (+)
G508559 dph7 other upstream 990565 42129225 ~ 42131940 (+)
G507768 LOC105030512 other upstream 1651097 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 2262983 40568637 ~ 40886427 (+)
G506285 NA other upstream 2556076 40566067 ~ 40566429 (+)
G510416 NA other downstream 533848 43657468 ~ 43658493 (+)
G512192 LOC106584908 other downstream 2060819 45184439 ~ 45185869 (+)
LOC110526028 ccdc60 other downstream 2094107 45187119 ~ 45236944 (+)
G512912 NA other downstream 2511969 45635589 ~ 45636250 (+)
LOC110526042 LOC106584891 other downstream 3063380 46076084 ~ 46190292 (+)

Expression


Co-expression Network