G509949 (LOC106578716)


Basic Information

Item Value
gene id G509949
gene name LOC106578716
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43122546 ~ 43123092 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU578766
GGGCTCTAGAACGCTGGCATCAGACGCTGAAGGCAATGCTACGCAAGTATTGTATGGATACCAGTACTGATTGGGATGAGGGGGTGCCCTTTGTCCTATTTGCTATAAGGGAAACGATACAAGAGTCCTTAGGGTTCAGCCCTGCTGACCTTGTGTTTGGACACACCCCACGGGGTCCGCTtaaagttttgaaggagcatatCTTATCTCCTACACCCAGTAGCGCCCCTAAAAATGTGTTGGAATATGTCAGTAAGATGCGGGAGAGACTGCACGCCGCATGTGCGTTAGCCCAaaagtctctctcctcgtctcaaaAACGCATGAAGTTGCATTATGACAAAAAGGCTGTTGGCCGTTCATTTGCACCAGGGGATCAAGTTTTAGTTTTGTTGCCAATCCCTGGCTCATCTCTGTCAGCACGTTTTTCTGGACCATATCTGGTGGAAAAGAAAATCAATGACACCAATTATGTGATAAAGACACCAGATCGAAGGCGTTCTTCCCGTGTGTGTCATGTTAACATGCTGAAAACATATTATGTGCG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106578716

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU578766 True 547 TUCP 0.47 1 43122546 43123092

Neighbor

gene id symbol gene type direction distance location
LOC110526002 LOC106585226 coding downstream 104027 43005570 ~ 43018519 (-)
zgc:101858 LOC106585225 coding downstream 124688 42992049 ~ 42997858 (-)
LOC110525998 LOC106585223 coding downstream 334058 42766320 ~ 42788488 (-)
LOC110525997 LOC106585221 coding downstream 392952 42654984 ~ 42729594 (-)
LOC110525994 LOC106585220 coding downstream 535260 42576529 ~ 42587286 (-)
LOC110526003 LOC106585228 coding upstream 566212 43689304 ~ 43813410 (-)
prodhb LOC100194675 coding upstream 817698 43940790 ~ 43955257 (-)
LOC110526006 LOC106584969 coding upstream 921954 44045046 ~ 44099131 (-)
nf2a nf2 coding upstream 1087758 44209338 ~ 44272386 (-)
fbxw8 fbxw8 coding upstream 1186802 44309894 ~ 44345449 (-)
G509933 NA non-coding downstream 15426 43103767 ~ 43107120 (-)
G509919 NA non-coding downstream 32143 43090190 ~ 43090403 (-)
G509912 NA non-coding downstream 36423 43085849 ~ 43086123 (-)
G509899 NA non-coding downstream 48804 43072251 ~ 43073742 (-)
G509882 NA non-coding downstream 77965 43039741 ~ 43044581 (-)
G509950 NA non-coding upstream 775 43123867 ~ 43124142 (-)
G509967 NA non-coding upstream 16102 43139194 ~ 43139409 (-)
G509974 NA non-coding upstream 19587 43142679 ~ 43142889 (-)
G509976 NA non-coding upstream 20164 43143256 ~ 43143481 (-)
G509989 NA non-coding upstream 28895 43151987 ~ 43152289 (-)
G509902 NA other downstream 45389 43076692 ~ 43077157 (-)
G509432 NA other downstream 476677 42643519 ~ 42645869 (-)
G509034 LOC106585214 other downstream 719326 42372441 ~ 42403220 (-)
G508891 NA other downstream 977661 42144097 ~ 42144885 (-)
G508303 NA other downstream 1301336 41820855 ~ 41821210 (-)
G509952 NA other upstream 1489 43124581 ~ 43125387 (-)
G510310 NA other upstream 400622 43523714 ~ 43524108 (-)
znrf3 LOC106584905 other upstream 2151546 45270568 ~ 45384850 (-)

Expression


Co-expression Network