G509971



Basic Information


Item Value
gene id G509971
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43141608 ~ 43141901 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU578788
gactccacctacatcattctatgtataaaaactgTTGTAACCTTTGTCTAAGCCCTTTTTCAGCTAACTCCATTTTGAGTTAAATGAATCAGGTCCGTGCACGTTAAAActgcaggacaagatatcttttgactcaataaactgcctttttgttacaactgaaatccactctgtccagcgtccatgatttggtctcacTCTCCTGTAAGTAAATCATCAACAAAAatggtagcagaggatggtttaaACATCTGAATTCGATCTAGGACAAGTTGATGTGAGAGACGACAAATC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU578788 True 294 lncRNA 0.38 1 43141608 43141901

Neighbor


gene id symbol gene type direction distance location
LOC118965079 NA coding upstream 116910 43023780 ~ 43024698 (+)
col27a1b LOC106585224 coding upstream 149377 42853787 ~ 42992257 (+)
LOC118965026 LOC106585222 coding upstream 305502 42829811 ~ 42836106 (+)
LOC110525999 LOC106585222 coding upstream 316450 42810314 ~ 42825158 (+)
LOC118964872 NA coding upstream 360817 42779261 ~ 42780791 (+)
LOC110526005 LOC106585229 coding downstream 814276 43937835 ~ 43981885 (+)
LOC118964874 NA coding downstream 850932 43992833 ~ 43995155 (+)
LOC110526008 NA coding downstream 1117195 44259096 ~ 44260124 (+)
LOC110526009 LOC106585233 coding downstream 1142951 44284852 ~ 44295238 (+)
LOC110526012 LOC106585234 coding downstream 1153713 44295614 ~ 44309360 (+)
G509968 NA non-coding upstream 1765 43139610 ~ 43139843 (+)
G509948 LOC106578716 non-coding upstream 17988 43122505 ~ 43123620 (+)
G509931 NA non-coding upstream 29389 43108775 ~ 43112219 (+)
G509930 NA non-coding upstream 33117 43108205 ~ 43108491 (+)
G509924 NA non-coding upstream 47093 43094221 ~ 43094515 (+)
G509975 NA non-coding downstream 1228 43143129 ~ 43143365 (+)
G509985 NA non-coding downstream 8309 43150210 ~ 43150470 (+)
G509996 NA non-coding downstream 14727 43156628 ~ 43156859 (+)
G509997 NA non-coding downstream 15582 43157483 ~ 43157770 (+)
G510011 NA non-coding downstream 48996 43190897 ~ 43191295 (+)
G509160 NA other upstream 571439 42567105 ~ 42570169 (+)
G508559 dph7 other upstream 1009668 42129225 ~ 42131940 (+)
G507768 LOC105030512 other upstream 1670200 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 2282086 40568637 ~ 40886427 (+)
G506285 NA other upstream 2575179 40566067 ~ 40566429 (+)
G510416 NA other downstream 515567 43657468 ~ 43658493 (+)
G512192 LOC106584908 other downstream 2042538 45184439 ~ 45185869 (+)
LOC110526028 ccdc60 other downstream 2075826 45187119 ~ 45236944 (+)
G512912 NA other downstream 2493688 45635589 ~ 45636250 (+)
LOC110526042 LOC106584891 other downstream 3045099 46076084 ~ 46190292 (+)

Expression



Co-expression Network