G511197


Basic Information

Item Value
gene id G511197
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 44209773 ~ 44211918 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU580054
ACTacgtattcagaccatttactttgttgaagcacctttggcattgtttacagcctcaagtattcttgggtatgacgctacaagcttggcacagctgtatttggggagtttctcccattctctctcaagctcggtcaggttggatggggaacgtcactgcacagctattttcaggtctctccagagatgttagatcaggttcaattccgggctgtggctgggccactcaaggacattcagagacttgtcccgaagccactcctgcgtagtCTGGGTTGtgttcttagggtcattgtcctgttggaaggtgaaccgccaccccagtctgagttcctgagcgctctggagtaggttctcatcaaggacctctgtactttgctccgttcatgtttctcctcgatcctgactagtctcccagtccctgaaaagcatccccatagcatgatgctgccaccaccatgcttcaccgtagggaacctaccaggtttcctgcagacgtgacgcttggcattcgggccaaagagtttaatcttagtttcaccagagatggttgtccttctggaaggttttaccatctccactgaggaactctagagccctgtcagagtgaccatcaggttcttggtcacctccctgaccaaggcccttctctcctgattgcacagtttggccgggtggccagctctaggaagtcttggtggttccaaacttcttccatttaagaatgatggagggcactgtgttctGTGGGACTttaaatgctgcagacattttttggtacccttccccagatcggtgcctcgacaaaatcgtgtctgagctctacggacaattccttcaacctcatggcttgatttttgcgcCGACATGCAAtatcaactgagggaccttatatagacaggtgtgtgcctttccaaatcatgtccagtcaattgaacttactacaggtggactccaattaagttgtagaaacatctcaaggatgatcaacggaaacaggatgcacctcagctcaatttcaagtctcatagcaaaccgGCTGAATacttt
>TU580055
cgttcatgtttctcctcgatcctgactagtctcccagtccctgaaaagcatccccatagcatgatgctgccaccaccatgcttcaccgtagggaacctaccaggtttcctgcagacgtgacgcttggcattcgggccaaagagtttaatcttagtttcaccagagatggttgtccttctggaaggttttaccatctccactgaggaactctagagccctgtcagagtgaccatcaggttcttggtcacctccctgaccaaggcccttctctcctgattgcacagtttggccgggtggccagctctaggaagtcttggtggttccaaacttcttccatttaagaatgatggagggcactgtgttctGTGGGACTttaaatgctgcagacattttttggtacccttccccagatcggtgcctcgacaaaatcgtgtctgagctctacggacaattccttcaacctcatggcttgatttttgcgcCGACATGCAAtatcaactgagggaccttatatagacaggtgtgtgcctttccaaatcatgtccagtcaattgaacttactacaggtggactccaattaagttgtagaaacatctcaaggatgatcaacggaaacaggatgcacctcagctcaatttcaagtctcatagcaaaccgGCTGAATacttttacaaataaaaacacagaaataccttatttacattagcaaacatttatacaaacctgttttctctgtcattattgggtattgtgtgtagactgatcaggcaaaaaaattatttaatatattttagaataagtctaatgtaacaaaatatgcaAACCGTTTCAGAGTGCACTGTATTAGATCAATACAATGGAATGCAAACTCAAGTTTGTTCAAAGagcaaaacaataaacataaccctaacattTTTCCCAAAAGTACCAACGATGTCCTAGATcagtgtttcccaatcctggtcatGGGGATTCAAAATGTTCACCCCACACATTTTCGTTTTTGCCCCATCCCAACTGAATAAACTAATCTAAGCACTGATGAGGAGCTGATTAGTTGAATGAAGCGTGTTAATGCTAgggcaaaacaacaaaaatgtgcaTCGCTGTGGGTCCCCAGTATCAAGATTCAGGAAAACTGTGCTAGAAGTACACCGGATTATTGTACTGTAATACTCTTACCATTCCTTCATCTTCACCCAGTCTGAGTTCAAAGGCTATTCCACTCTGCTTTTAAAGGGTAGAACAGAATATAGTGCACTTGGTACCTTCGTAGTAGAGAACACCTATACAGAAATTCACTTACGGCAGTCAGAGGCTTGAGGTGACGTGATACGAGTTGATAATATTTTACTGTAATTTTTCAGTGGTATTTACCTTTCAGTGGTATTTACCTTATAACTTATTTGAGTGTTAAGGATACTGATACATAATTAAACATACTTTACCTACCTGCTAGTGAATGGTGAACAGTATGTTCGTTTCAATGTTACACAAATAACACAAACTGTAGTTATTGTAAGTATTGTTTGGTTATTTTAAGGTAAATATCAGGTAAGAAGTAGTGGAATGTAAATGAAAGTGTAACTCATGATTTGTCTCTCTTGGCCTATACAGTATTTAAACTCCAGTTCTGAAATTAGTTTTGACCTAGGCAGTGGTCCATCGTTTGACCGCAGTTGTGGTGAGTATCTCCCAGCAAATGGAGCCAAAGGCCACGTAGTATGGAATGTACTGTAGTGATAAAGTTTCTCCAGAGACATGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU580054 False 1050 lncRNA 0.49 1 44209773 44210822
TU580055 True 1765 lncRNA 0.41 1 44210154 44211918

Neighbor

gene id symbol gene type direction distance location
LOC118964874 NA coding upstream 214618 43992833 ~ 43995155 (+)
LOC110526005 LOC106585229 coding upstream 227888 43937835 ~ 43981885 (+)
LOC118965079 NA coding upstream 1185075 43023780 ~ 43024698 (+)
col27a1b LOC106585224 coding upstream 1217542 42853787 ~ 42992257 (+)
LOC118965026 LOC106585222 coding upstream 1373667 42829811 ~ 42836106 (+)
LOC110526008 NA coding downstream 47178 44259096 ~ 44260124 (+)
LOC110526009 LOC106585233 coding downstream 72934 44284852 ~ 44295238 (+)
LOC110526012 LOC106585234 coding downstream 83696 44295614 ~ 44309360 (+)
LOC110526014 NA coding downstream 125808 44337537 ~ 44339789 (+)
LOC110526013 LOC106585235 coding downstream 133564 44345482 ~ 44348787 (+)
G511194 NA non-coding upstream 4185 44205360 ~ 44205588 (+)
G511030 NA non-coding upstream 119318 44090126 ~ 44090455 (+)
G510986 NA non-coding upstream 179855 44029690 ~ 44029918 (+)
G510950 NA non-coding upstream 207579 44001893 ~ 44002194 (+)
G510946 NA non-coding upstream 210782 43998783 ~ 43998991 (+)
G511247 NA non-coding downstream 62499 44274417 ~ 44274816 (+)
G511249 NA non-coding downstream 65930 44277848 ~ 44278307 (+)
G511256 NA non-coding downstream 72333 44284251 ~ 44284595 (+)
G511281 NA non-coding downstream 128002 44339920 ~ 44342925 (+)
G510416 NA other upstream 551280 43657468 ~ 43658493 (+)
G509160 NA other upstream 1639604 42567105 ~ 42570169 (+)
G508559 dph7 other upstream 2077833 42129225 ~ 42131940 (+)
G507768 LOC105030512 other upstream 2738365 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 3350251 40568637 ~ 40886427 (+)
G512192 LOC106584908 other downstream 972521 45184439 ~ 45185869 (+)
LOC110526028 ccdc60 other downstream 1005809 45187119 ~ 45236944 (+)
G512912 NA other downstream 1423671 45635589 ~ 45636250 (+)
LOC110526042 LOC106584891 other downstream 1975082 46076084 ~ 46190292 (+)
G513501 NA other downstream 2148038 46359956 ~ 46360585 (+)

Expression


Co-expression Network