G511284


Basic Information

Item Value
gene id G511284
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 44349125 ~ 44350035 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU580157
ACTTCAAGGATGGCAGTCTCATGCTGAAGTATTTAGCGAACATAGAGTAGTGGAAGAATTCAGTTAGTCTTCAGGCAAATGCTATACACCCTGGAATACAGTGATTGGACATCAGGGGCCTCAGTTTCTATgcaatataaaaacatatttaaaaaattgGCCAATGTACATTCACTGGAGAATGAATTGGAGAATCTCCGTCGAGTCTATCCTACCGACGGGACATAAAAAAATTgtcatatcttatgtttcaccgagttgtggctgaaccaTGAcacataatatacagttggctgggtttgcCGTGCagcggcaggacagaacagctacagtggggcaaaaaagtatttagtcaaccaccaattgtgcaagttctcccacttaaagatgaggcctgtaattttcatcatgggtatacttcaactatgacagacaaaatgagaagaaaaaaatccagaaaattgttgaatttttaatgaatttatttgcaaattatggtggaaaataagtatttggtcacctacaaacaagcaagatttctggctctcacagacctgtaagttcttctttaagaggctcttctgtcctccactcgttacctgtattaatggcacctgtttgaacttgttatcagtattaaagacacctgtccacaacttcaaacagtcacactccaaactccactatggccaagaccaaagagctgtcaaaggacaccagaaacaaaattgtagacctgcaccaggctgggaagactgaatctgcaattggtaagcagcttggtttgaagaaatagccccaaaacatcactgctctaga
>TU580156
ggaaaataagtatttggtcacctacaaacaagcaagatttctggctctcacagacctgtaagttcttctttaagaggctcttctgtcctccactcgttacctgtattaatggcacctgtttgaacttgttatcagtattaaagacacctgtccacaacttcaaacagtcacactccaaactccactatggccaagaccaaagagctgtcaaaggacaccagaaacaaaattgtagacctgcaccaggctgggaagactgaatctgcaattggtaagcagcttggtttgaagaaatagccccaaaacatcactgctctagaggagatctgcatggaggaatgggccaaaataccagcaacagtgtgtgaaaaccttgtgaagacttacagaaaacatttgacctctgtcattg

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU580157 False 819 lncRNA 0.40 1 44349125 44349943
TU580156 True 412 lncRNA 0.43 1 44349624 44350035

Neighbor

gene id symbol gene type direction distance location
LOC110526013 LOC106585235 coding upstream 338 44345482 ~ 44348787 (+)
LOC110526014 NA coding upstream 9336 44337537 ~ 44339789 (+)
LOC110526012 LOC106585234 coding upstream 39765 44295614 ~ 44309360 (+)
LOC110526009 LOC106585233 coding upstream 53887 44284852 ~ 44295238 (+)
LOC110526008 NA coding upstream 89001 44259096 ~ 44260124 (+)
LOC110526020 NA coding downstream 380032 44730067 ~ 44740687 (+)
LOC110526024 suds3 coding downstream 523350 44873385 ~ 44895982 (+)
LOC110526025 srrm4 coding downstream 711623 45061658 ~ 45152985 (+)
LOC110526027 hspb8 coding downstream 805946 45155981 ~ 45178825 (+)
LOC110526028 ccdc60 coding downstream 837084 45187119 ~ 45236944 (+)
G511281 NA non-coding upstream 6200 44339920 ~ 44342925 (+)
G511256 NA non-coding upstream 64530 44284251 ~ 44284595 (+)
G511249 NA non-coding upstream 70818 44277848 ~ 44278307 (+)
G511247 NA non-coding upstream 74309 44274417 ~ 44274816 (+)
G511283 NA non-coding downstream 213 44350248 ~ 44351084 (+)
G511285 NA non-coding downstream 2515 44352550 ~ 44352753 (+)
G511389 NA non-coding downstream 15940 44365975 ~ 44367235 (+)
G511417 NA non-coding downstream 61797 44411832 ~ 44432361 (+)
G511430 NA non-coding downstream 86303 44436338 ~ 44439473 (+)
G510416 NA other upstream 690632 43657468 ~ 43658493 (+)
G509160 NA other upstream 1778956 42567105 ~ 42570169 (+)
G508559 dph7 other upstream 2217185 42129225 ~ 42131940 (+)
G507768 LOC105030512 other upstream 2877717 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 3489603 40568637 ~ 40886427 (+)
G512192 LOC106584908 other downstream 834404 45184439 ~ 45185869 (+)
G512912 NA other downstream 1285554 45635589 ~ 45636250 (+)
LOC110526042 LOC106584891 other downstream 1836965 46076084 ~ 46190292 (+)
G513501 NA other downstream 2009921 46359956 ~ 46360585 (+)

Expression


Co-expression Network