G511417


Basic Information

Item Value
gene id G511417
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 44411832 ~ 44432361 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU580307
CTCCATGCACTCTTCAAATAGCCTAAATTCCATGTCAGTGACGGGCTGTTAAGTTAAAACCAGGACTCAAATTGACGGGGTATGAGAGGGTATGCCATAGGCCTACCTTTTATTAAAGAAAATGCAAAAAGCACAGGCACATTGTTAGTTTAAGATTTTGCAAAAATGTTATAAAGTGATCAATAACAGCACTTTGGTCCGCAATGCTTTATGttagaaacaagctgtaaaatacaCTGGAAAGACATGAATGCATATGGGGGATATCATTGTTTAatttctttgacattcagagactgAGCTACAATCTTTTATAGCCGAGGAGACAGAACATGgttgcttgggaagtaatctaattctgtcactatcaattgattaagctattTACATTCTGTACAATAGAAGATGTTTAACCTCAGACAGCTTTTAGAAAACACTTGTTACCTCTGTTGGGTTAAGCCAAggaagaagagtagccagcagttaaaaCTTACATTTGTCTGTGTCGGTCggcctactgtctggggtggaaaggcaggcctactgtctggggtggaaaggtaggcctactgtctggggtggaaaggtagacctaaCTTTTGAAACTACCATGCTCAGATTCCTTACGAcatttctgatttcattatttgCAAACAGGGAGAGTTTCGTTGCAAATaagacacactgatttggcattggaggaatatgataagatgaacacatagataggcctatctctctgtccattcttagcctgtaatttcagtaatttgtgtggtattaaaaaatattttgtaaatacagtatgtaaaatTATGCAGAATTGCATGACATTTTTACAAAAGGCTTTTTTTTCTCTCAGACCTGGAAATACAATGATAGATCAATTCAAAACTTTTCCCACCCCTACTGTGGTCCATAGTGGTCTGTGAACCCACAATCTTCTGGACCCCAAGCCATGTgttgccatgtaatgcttacaggactaagaacagtttctaaaatggcataaggctctggtctgtccaagaagtgaggtAAGGATGTTCTTTGCTATCCACTTTAGGTTTTCATTATTCTTTTGAgtatagggggaggggggggtcacTTGTTATTTTTCAAACGTCTAGGGAGGGTTTAGGTCAAATAAACTTCGCTGAGGGGATGGCCATCCATTTTCATCTCAGAGAGGTCCGATTTTCTCTATCTAATTGCAAATAACATTCACACCCTAATTGGAGTGCCCAGGATTTTGTTTACTATAtaacgtctacccctgagtccaggttgaaaATATGAGTGTGATGGTCTGATGGGTAGGCCCTATTATCTGTACACATTTTCCAACACAGACCATATAGAAATGTACACAGTACAGATAGGATGTGAAAGCAATATATCATTTATACAGATCATGATGTTTCCAAAAATGCAATACCCATTTCCACAAGCTAAGATGTAAAAGTACAAGTACTGTAGTTCTTCAATACAATTGACAAGTTGTCTTGGTGCTGTAGGTGAGAAAGGTTGTCAATGCATTGTGCATTCAATTCACCTAGAATTCATAAACATCTGATATTCCAGATGCTTTGCTGTCTTGAAGAAAgtattcctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU580307 True 1616 lncRNA 0.39 3 44411832 44432361

Neighbor

gene id symbol gene type direction distance location
LOC110526013 LOC106585235 coding upstream 63045 44345482 ~ 44348787 (+)
LOC110526014 NA coding upstream 72043 44337537 ~ 44339789 (+)
LOC110526012 LOC106585234 coding upstream 102472 44295614 ~ 44309360 (+)
LOC110526009 LOC106585233 coding upstream 116594 44284852 ~ 44295238 (+)
LOC110526008 NA coding upstream 151708 44259096 ~ 44260124 (+)
LOC110526020 NA coding downstream 297706 44730067 ~ 44740687 (+)
LOC110526024 suds3 coding downstream 441024 44873385 ~ 44895982 (+)
LOC110526025 srrm4 coding downstream 629297 45061658 ~ 45152985 (+)
LOC110526027 hspb8 coding downstream 723620 45155981 ~ 45178825 (+)
LOC110526028 ccdc60 coding downstream 754758 45187119 ~ 45236944 (+)
G511389 NA non-coding upstream 44597 44365975 ~ 44367235 (+)
G511285 NA non-coding upstream 59079 44352550 ~ 44352753 (+)
G511283 NA non-coding upstream 60748 44350248 ~ 44351084 (+)
G511284 NA non-coding upstream 61797 44349125 ~ 44350035 (+)
G511281 NA non-coding upstream 68907 44339920 ~ 44342925 (+)
G511430 NA non-coding downstream 3977 44436338 ~ 44439473 (+)
G511431 NA non-coding downstream 8134 44440495 ~ 44441391 (+)
G511435 NA non-coding downstream 14706 44447067 ~ 44447423 (+)
G511436 NA non-coding downstream 15136 44447497 ~ 44447956 (+)
G511532 NA non-coding downstream 147891 44580252 ~ 44583363 (+)
G510416 NA other upstream 753339 43657468 ~ 43658493 (+)
G509160 NA other upstream 1841663 42567105 ~ 42570169 (+)
G508559 dph7 other upstream 2279892 42129225 ~ 42131940 (+)
G507768 LOC105030512 other upstream 2940424 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 3552310 40568637 ~ 40886427 (+)
G512192 LOC106584908 other downstream 752078 45184439 ~ 45185869 (+)
G512912 NA other downstream 1203228 45635589 ~ 45636250 (+)
LOC110526042 LOC106584891 other downstream 1754639 46076084 ~ 46190292 (+)
G513501 NA other downstream 1927595 46359956 ~ 46360585 (+)

Expression


Co-expression Network