G512008


Basic Information

Item Value
gene id G512008
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 44727822 ~ 44728825 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU580938
aagtccagtacccagttgcacagggcggggtcgagacccagggtctcgagcttgatgacgagctttgagggtactatggtgttgaatgctgagctatagtcaatgaacagcattcttacataggtattcctcttgtccagatgggattggGCAGTGttatggcgattgcatcgtctgtggacctattggggaggtaagcaaattgaagtgggtctaagcacttcatgatgacagatgtgagtgctacggggcgatagtaatttagtgcagttacctttgccttcttgggtacaggaacactTGTGGCCATCTTTAAGCATGTggagacagcagactgggacagggagagatggaataTTTACGTAAAcataccagccagctggtctgagcaTGCTCGGAGGACGCGACTAGGGATGCtttctgggctggcagccttgcgaggtttaacacgtttaaatgtcttattgattccgattggtcagaccagcgttgaatattACTTAacacgggtacatcctgtttgattTTATGCCTATAGGAAGGAACCAattggagtcgtggtcagatttgccaaaaggagggcgggggagggccttgtctGCATCGCAGAAGAAAGAGTAGCAGTGATTCAGAGTTTGCTGATAGAAtgtaggtagccttgttctcaaatttgctttgttaaagtcccccgctacaataaatgcagccatAGGATATATGGtatccagtttgcataaagtccagggAGGTTCATCGAGGGCCGTGGTAatggcttgaggggggatatacacagctgtgacatTAACAgaggagaattctcttgggagataatacggtcggcatttgattgtgaggaattataggtcaggtgaacaaaaggacttgagttcttgtatgctgttacaattacaccatgagtcgctaatcatgaaacatacattcCCTTGTCCTTGCTGAAAAGACTGGGAAACTGATTGCGATATGGTAGCTAAAATACCTACTTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU580938 True 1004 lncRNA 0.46 1 44727822 44728825

Neighbor

gene id symbol gene type direction distance location
LOC110526019 cirbp coding downstream 9393 44717516 ~ 44718429 (-)
LOC118965027 LOC106585243 coding downstream 10733 44643847 ~ 44717089 (-)
LOC110526017 LOC106585243 coding downstream 135204 44536009 ~ 44592618 (-)
nos1 LOC106585241 coding downstream 226643 44436292 ~ 44501179 (-)
lrrc74b lrrc74b coding downstream 292048 44411696 ~ 44435774 (-)
wsb2 wsb2 coding upstream 12114 44740939 ~ 44748610 (-)
LOC110526021 vsig10 coding upstream 20776 44749601 ~ 44756143 (-)
taok3a taok3 coding upstream 34066 44762891 ~ 44855594 (-)
LOC110526026 LOC106584908 coding upstream 450415 45179240 ~ 45185652 (-)
trnaw-cca NA coding upstream 499582 45228407 ~ 45228478 (-)
G511967 NA non-coding downstream 68335 44658893 ~ 44659487 (-)
G511958 NA non-coding downstream 84288 44643285 ~ 44643534 (-)
G511957 NA non-coding downstream 85223 44642399 ~ 44642599 (-)
G511885 NA non-coding downstream 177545 44523903 ~ 44550277 (-)
G512009 NA non-coding upstream 68 44728893 ~ 44729483 (-)
G512084 NA non-coding upstream 147800 44876625 ~ 44878344 (-)
G512599 NA non-coding upstream 422459 45151284 ~ 45152892 (-)
G512650 NA non-coding upstream 488415 45217240 ~ 45217441 (-)
G512655 NA non-coding upstream 494052 45222877 ~ 45223103 (-)
nf2a nf2 other downstream 515999 44209338 ~ 44272386 (-)
prodhb LOC100194675 other downstream 779433 43940790 ~ 43955257 (-)
G510310 NA other downstream 1203714 43523714 ~ 43524108 (-)
G509952 NA other downstream 1602435 43124581 ~ 43125387 (-)
G509949 LOC106578716 other downstream 1604730 43122546 ~ 43123092 (-)
znrf3 LOC106584905 other upstream 545813 45270568 ~ 45384850 (-)
apba1a apba1 other upstream 1631063 46263121 ~ 46360886 (-)
LOC110526044 LOC107699739 other upstream 1641865 46367701 ~ 46430607 (-)
G514434 NA other upstream 2181833 46910658 ~ 46910950 (-)
G514777 NA other upstream 2287337 47016162 ~ 47016496 (-)

Expression


Co-expression Network