G512599


Basic Information

Item Value
gene id G512599
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 45151284 ~ 45152892 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU581570
tcggttactactccaacgctctaaccactaggctaccctgcctagtgGTGGCATTGCATAGAAACATAGACCATTGCTGAGAGGCAACACAAAAGCATGAACATTACTGTAAACACGTTATAAATATGCATGACACAAAAATGTGTGTTTCAAAACTTGACCTTTGGTGGGCGGACTATGCAAACAAGAGAGGTGAAGTGTGTGTTTGATTCTGCTTCTGAAATACCAAACACATTATTGAACAGCGCTATTTGGGACCGTTACACAAAAAATCTGAATAACAAAATAACAGATTTATCCAATAGTGAATCTCCTCTCTGTCAAACATATGCTGAGAAGAAAAACCATTGAACACTCTCTCATTGCACTCTTATTCAAGTTTCAttcaaaataataaaataaatagaacACAGATCATttgcataaataaataaatatatgaatTAATAAATAACTACCTAGATAAATAAATATGACAACCTAGCAGCTACTAaaacagtgtaaaaaaaaaatctcttttGAGGAGCTGTTATGAAGACAGACATTTTTATGAAAACCCACTTTTTCAGCCCTTCTGTGCAGTGGTTTGATCATTCATCTTATAAGGAATTAAATTTCAATTGTTTTCCACTTGATTAGAGGATAAATAAATCTGAGCTGATAGGCAGTTTGTTTGGCATCGGGACTTccgcctcctcctcttcctcccccttctcaTCATTTCTCGGAGGCATGTTTTTGCTCCACATCATTAAGAGCTGAGATCAGAGATGGTCAGAAACTTAAGAGTTGTTATAAAATAAGAGTTTATCAGAGGGTTAAATTGAACAATGCTCCTCCATCCTTCGTTTCGGACACAGACGTCCGAGGAAGAGTGTCTCAAGGAAAAACAGTCTCTGGCCATTTTGAATGCTAATGCATGACGAGGACACAGCGGACTGAAAAAAAAAACCAACCAAAGAAAACAAACAATCTATTTCCAGTGGTTTCTGTCTTCAATACATCATGGACGAGACAACTGCCTCTATTCAAGACATCGTTGAACAAATAAcgacacaaaaaaaaatacacttACTTGAAGGGTCTGGCTCAGGCATCTAACACAAAAAAGACGCAAAGAGATGAAAACATTACCTCATACTTCCGCTGGGAGATTGAGAAATGATGATGCAGGCTCCTCTGTAACCTCCTCAGGCTGTTGAAAAAAAACTCAGTGCCGGTTCTTGCCCTTGCTGTAACCGTCCAACGAGTCATAGCTGCGACTCCGGCTCTGACTGCGGTTCCGGCGACCAAAGATGGAGTTCCAAGAGGAGCTGCGACTGTAGCTCCGGTAGGAGAAGTAGCTCCTACTCCTACTTCTTCCTCGGCTCCTGCTCCTACTCCTACTCCTTGAACTACTGAGGCAGAGGCCAGGACTGGACCTAGGGCTGTGACTCCGTGTGAAGAGGCTGCTCCAAGAGGATACACTGGTAGAGCGACTGCTGGATGAAGGACTGGGCCGGAAGTAGGGGATGGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU581570 True 1517 lncRNA 0.42 2 45151284 45152892

Neighbor

gene id symbol gene type direction distance location
taok3a taok3 coding downstream 295690 44762891 ~ 44855594 (-)
LOC110526021 vsig10 coding downstream 395141 44749601 ~ 44756143 (-)
wsb2 wsb2 coding downstream 402674 44740939 ~ 44748610 (-)
LOC110526019 cirbp coding downstream 432855 44717516 ~ 44718429 (-)
LOC118965027 LOC106585243 coding downstream 434195 44643847 ~ 44717089 (-)
LOC110526026 LOC106584908 coding upstream 26348 45179240 ~ 45185652 (-)
trnaw-cca NA coding upstream 75515 45228407 ~ 45228478 (-)
xbp1 xbp1 coding upstream 98994 45251886 ~ 45254834 (-)
znrf3 LOC106584905 coding upstream 117676 45270568 ~ 45384850 (-)
coq5 coq5 coding upstream 262083 45414975 ~ 45418844 (-)
G512084 NA non-coding downstream 272940 44876625 ~ 44878344 (-)
G512009 NA non-coding downstream 421801 44728893 ~ 44729483 (-)
G512008 NA non-coding downstream 422459 44727822 ~ 44728825 (-)
G511967 NA non-coding downstream 491797 44658893 ~ 44659487 (-)
G511958 NA non-coding downstream 507750 44643285 ~ 44643534 (-)
G512650 NA non-coding upstream 64348 45217240 ~ 45217441 (-)
G512655 NA non-coding upstream 69985 45222877 ~ 45223103 (-)
G512657 NA non-coding upstream 72662 45225554 ~ 45226243 (-)
G512614 NA non-coding upstream 83587 45236479 ~ 45238029 (-)
G512668 NA non-coding upstream 93679 45246571 ~ 45247308 (-)
nf2a nf2 other downstream 939461 44209338 ~ 44272386 (-)
prodhb LOC100194675 other downstream 1202895 43940790 ~ 43955257 (-)
G510310 NA other downstream 1627176 43523714 ~ 43524108 (-)
G509952 NA other downstream 2025897 43124581 ~ 43125387 (-)
G509949 LOC106578716 other downstream 2028192 43122546 ~ 43123092 (-)
apba1a apba1 other upstream 1206996 46263121 ~ 46360886 (-)
LOC110526044 LOC107699739 other upstream 1217798 46367701 ~ 46430607 (-)
G514434 NA other upstream 1757766 46910658 ~ 46910950 (-)
G514777 NA other upstream 1863270 47016162 ~ 47016496 (-)

Expression


Co-expression Network