G512308


Basic Information

Item Value
gene id G512308
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 45247365 ~ 45248229 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU581252
ggtcaataacaaaagtttatctcaatactttgttatatggccctttgttggcaatgacagaggtcaaacgttttctgtaagtcttcacaaggttttcacacactgttgctgtttttttggcccatttctccatgcagatctcctctagagcagtgatttttttggggctgttgctgggcaacacggactttcaactccctccaaagattttctatagggttgagatctggagactggctaggccactccaggaccttgaaatgcttcttacgaagccactccttcgttgcccgggtggtgtgtttgggatcattgtcatgctgaaagacccagccacgtttcatcttcaatgcccttgctgatggtaggctttgttactttggtcccagctctctgcaggtcattcactaggtccacccgtgtggttctgggatttttgctcaccgttcttgtgttcattttgaccccacgtgagatcttgcgtggatccccagatcgagggagttTATCAGTGCtcttgtatgtctttcatttcctaataatttctcccacagttgatttcttcaaaccaagctgcttacctattgcagattcagtcttcccagcctggtgcaggtctacaattttgtttctggtgtcctttgacagctatttggtcttggccatagtagagtttggagtttgactgtttgaggttgtggacaggtgtcttttatactgataacaagttcaaacaggtgccattaatacaggtaaggaGTGgaggcctcttaaagaagaagttacaggtctgtgagagccagaaatcctgcttgtttgtaggtgaccaaatacttattttccaccataatttgcaaataaattc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU581252 True 865 lncRNA 0.44 1 45247365 45248229

Neighbor

gene id symbol gene type direction distance location
LOC110526028 ccdc60 coding upstream 10421 45187119 ~ 45236944 (+)
LOC110526027 hspb8 coding upstream 68540 45155981 ~ 45178825 (+)
LOC110526025 srrm4 coding upstream 94380 45061658 ~ 45152985 (+)
LOC110526024 suds3 coding upstream 351383 44873385 ~ 44895982 (+)
LOC110526020 NA coding upstream 506793 44730067 ~ 44740687 (+)
si:dkey-174n20.1 LOC106584900 coding downstream 399505 45647734 ~ 45654067 (+)
LOC110526036 LOC106584896 coding downstream 565169 45813398 ~ 45837739 (+)
LOC110526902 NA coding downstream 624590 45872819 ~ 45873709 (+)
LOC118964875 NA coding downstream 651690 45899919 ~ 45901120 (+)
LOC110525032 NA coding downstream 710201 45958430 ~ 45959299 (+)
G512306 NA non-coding upstream 3717 45243430 ~ 45243648 (+)
G512263 NA non-coding upstream 9563 45237203 ~ 45237802 (+)
G512299 NA non-coding upstream 11414 45235599 ~ 45235951 (+)
G512310 NA non-coding downstream 1763 45249992 ~ 45250211 (+)
G512311 xbp1 non-coding downstream 3660 45251889 ~ 45254762 (+)
G512316 NA non-coding downstream 20268 45268497 ~ 45268717 (+)
G512354 NA non-coding downstream 69885 45318114 ~ 45380696 (+)
G512392 NA non-coding downstream 131693 45379922 ~ 45448720 (+)
G512192 LOC106584908 other upstream 61496 45184439 ~ 45185869 (+)
G510416 NA other upstream 1588872 43657468 ~ 43658493 (+)
G509160 NA other upstream 2677196 42567105 ~ 42570169 (+)
G508559 dph7 other upstream 3115425 42129225 ~ 42131940 (+)
G512912 NA other downstream 387360 45635589 ~ 45636250 (+)
LOC110526042 LOC106584891 other downstream 938771 46076084 ~ 46190292 (+)
G513501 NA other downstream 1111727 46359956 ~ 46360585 (+)
G513745 NA other downstream 1652332 46900561 ~ 46901123 (+)
G514464 NA other downstream 1678613 46926842 ~ 46927714 (+)

Expression


Co-expression Network