G512311 (xbp1)



Basic Information


Item Value
gene id G512311
gene name xbp1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 45251889 ~ 45254762 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU581258
AAtgcaaagtttttttttaatgcagtAATTTTGATCTACAAGGAGAGTGTTTAACAAAATTATACAGGAGGTAAAGGCCTTTATACATACGGAAACAGATTACATACAGAAGACTCCGGAGCAGAatacacaaataaatacatttgtctTTTTAAAACAGTCAGTCCCAGTCCCCCAGGGAAATATAACTTAAAGAAATACTGGATATTTCACCCATTGGATTTCTCCTTAACTCCAACAATGAGTGGAAAGATTTAAAGCAACCTTACAAATCCACTAGCTGTCAATTAGTGACGGCAAATTAAGGTGTCAATAACTGCATCTCCCACAAGCCAATGCAGGATCGCAAAATCGTAGACCTGTAAAAGGAGATTAACTTTGGTTTGAACCCCCAAGATGAGGTACATGCTAGCTAGCCTTGTCTCCGATCAGTTTATGCTGTTTAGCCATTGGTAATCGGCACTGCTGGGACAGCCTATCAATATAAAGCATAATGTACTGTATTCACTTAACACTACACTAAATAGCAGTGAGTTCATAATAGGTTGGATCATTGATTAATGGGATGTGGGATACCAATGGGATGTTCAGAATCAGATCAGACACTGATCAACTGGGGGAACAGTTCGTTGGCAAACACATCATCCCAGGACCCCTCTGAGCAGAGGGGGGATGACATGTCGCTGATGGGGGAAGGGGACCGCTCGTATCCGGAGTCGCTGTAGGCATCCATCAGGTAGGCACCAGTCTTCTCTAGGCTACCCATGgccaggtcagaggtcagtgaGGCCACAGACAGGAAGTCATCCAGAACCCCATGATTTTTAGGGATGATGACCACTTCTTCCGGCTCATCTTTGACACACACGTCTACCTCGTCAGCCACAGAGAAGACCTCAGCCATCTTCATCCCTGTCACACTCTCCTCGTGATTCACTTCCTGCTGCCCGAGGACACACACCACCTCCACAGGCTTGGTGTAGATGTGGTCAAAGTGGATCAGTTCATTAAGGGCCTCCAGCTTAACTGGTGTGGCCCCCAGAGCTGCAGGTGAGGGGGCAGGTACTCCTCCCCCCCCTCCGACCAGCAGCACCGCCTGCTCCTGGATCTCCTGCTCACCACACTCCCTGAGGAACAGCTCTGGGTGAAGGATGTCAAGAATGCCCAGCAAGAGATCAgactggaggggagagggagcgagcaGGTTACAACTCTGAACAGGGAATGTCAGAACTGGAACTTACCAATAGGCAAGATGAGCATTATAAAAGCACTATGAGCTACTGGAATATGGACTAGACTAAATGAAGCCAATCAATAACTATAAAGTGCTGAATATCCATCTCCATTTGATAAAGCCCTTATCCATAGCTTACATTAGTGGTCATGCATTAGCTGTAGCAGACAAATTGTGTCCATAGTGGTCTACGTGTCTCACCTCAGAGTCTGTAGAGTCAAGACTATCTGTATCCATTGGGAAATCTTCAGATTTGAGAATTGCTGGGCCTGCACCTGCTGCAGAGGCACACATAGCCTGAGTACTGCAGACTCAGAAGACCCGATCCCCAAAACTGCATCAATCCCATTGGACTCCAACACCtgagcATTCTCTTTGGCCTCAAGGGTGTCCAACCCCAGCCTCTGTCTCAGTTCCTTGTTCTCGTTCACCATACCGCACATCTTTTGCCGTAACAGCCTGTTTTCAACATGAAGTTTCTGgttCTCCAGTTCCATCACCAGAACTTGCTCTTCCAGCTCACCCATTTTGGCTTTTTTTCTGTCTCTGGCCGTTTGGGCTGCAACTCTGTTCTTGAGTTTCCTGCGAAGTTGCTTTTCTTCTGGGCTCAAATGAGTGAGTCTCTGTCTTTTTCGCAGGGGTGGCCCAGTTGTCGAATTTGAGTCGGAATCTGACGAATTCGCTTGGTTTTGCGACGGCAAAACGACAGAAATTGACCGGCTGTAGCCCTGTGTTGAGCTAGAAGAGCCATTCTGTTGCCCAGATATCAAGAGGACTTTATGTCCCGCTGTCCCCACGACCATATTATTTATCCTTATAGACTTCAAAAATATTGGGGTAGCTTCAAAGAAACGTAAGGTTTATTTAGGTCTTTCTATCCCTGTCag
>TU581259
AAtgcaaagtttttttttaatgcagtAATTTTGATCTACAAGGAGAGTGTTTAACAAAATTATACAGGAGGTAAAGGCCTTTATACATACGGAAACAGATTACATACAGAAGACTCCGGAGCAGAatacacaaataaatacatttgtctTTTTAAAACAGTCAGTCCCAGTCCCCCAGGGAAATATAACTTAAAGAAATACTGGATATTTCACCCATTGGATTTCTCCTTAACTCCAACAATGAGTGGAAAGATTTAAAGCAACCTTACAAATCCACTAGCTGTCAATTAGTGACGGCAAATTAAGGTGTCAATAACTGCATCTCCCACAAGCCAATGCAGGATCGCAAAATCGTAGACCTGTAAAAGGAGATTAACTTTGGTTTGAACCCCCAAGATGAGGTACATGCTAGCTAGCCTTGTCTCCGATCAGTTTATGCTGTTTAGCCATTGGTAATCGGCACTGCTGGGACAGCCTATCAATATAAAGCATAATGTACTGTATTCACTTAACACTACACTAAATAGCAGTGAGTTCATAATAGGTTGGATCATTGATTAATGGGATGTGGGATACCAATGGGATGTTCAGAATCAGATCAGACACTGATCAACTGGGGGAACAGTTCGTTGGCAAACACATCATCCCAGGACCCCTCTGAGCAGAGGGGGGATGACATGTCGCTGATGGGGGAAGGGGACCGCTCGTATCCGGAGTCGCTGTAGGCATCCATCAGGTAGGCACCAGTCTTCTCTAGGCTACCCATGgccaggtcagaggtcagtgaGGCCACAGACAGGAAGTCATCCAGAACCCCATGATTTTTAGGGATGATGACCACTTCTTCCGGCTCATCTTTGACACACACGTCTACCTCGTCAGCCACAGAGAAGACCTCAGCCATCTTCATCCCTGTCACACTCTCCTCGTGATTCACTTCCTGCTGCCCGAGGACACACACCACCTCCACAGGCTTGGTGTAGATGTGGTCAAAGTGGATCAGTTCATTAAGGGCCTCCAGCTTAACTGGTGTGGCCCCCAGAGCTGCAGGTGAGGGGGCAGGTACTCCTCCCCCCCCTCCGACCAGCAGCACCGCCTGCTCCTGGATCTCCTGCTCACCACACTCCCTGAGGAACAGCTCTGGGTGAAGGATGTCAAGAATGCCCAGCAAGAGATCAgactggaggggagagggagcgagcaGGTTACAACTCTGAACAGGGAATGTCAGAACTGGAACTTACCAATAGGCAAGATGAGCATTATAAAAGCACTATGAGCTACTGGAATATGGACTAGACTAAATGAAGCCAATCAATAACTATAAAGTGCTGAATATCCATCTCCATTTGATAAAGCCCTTATCCATAGCTTACATTAGTGGTCATGCATTAGCTGTAGCAGACAAATTGTGTCCATAGTGGTCTACGTGTCTCACCTCAGAGTCTGTAGAGTCAAGACTATCTGTATCCATTGGGAAATCTTCAGATTTGAGAATTGCTGGGCCTGCACCTGCTGCAGACTCAGAAGACCCGATCCCCAAAACTGCATCAATCCCATTGGACTCCAACACCtgagcctggggggggggggagaggagtgaAGAGTTATAAACTAACTGG

Function


symbol description
xbp1 Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within gland development; hatching; and transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including axial mesoderm; axis; digestive system; ectoderm; and germ ring. Orthologous to human XBP1 (X-box binding protein 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU581258 False 2124 lncRNA 0.47 4 45251889 45254762
TU581259 True 1622 lncRNA 0.47 2 45251889 45253536

Neighbor


gene id symbol gene type direction distance location
LOC110526028 ccdc60 coding upstream 14945 45187119 ~ 45236944 (+)
LOC110526027 hspb8 coding upstream 73064 45155981 ~ 45178825 (+)
LOC110526025 srrm4 coding upstream 98904 45061658 ~ 45152985 (+)
LOC110526024 suds3 coding upstream 355907 44873385 ~ 44895982 (+)
LOC110526020 NA coding upstream 511317 44730067 ~ 44740687 (+)
si:dkey-174n20.1 LOC106584900 coding downstream 392972 45647734 ~ 45654067 (+)
LOC110526036 LOC106584896 coding downstream 558636 45813398 ~ 45837739 (+)
LOC110526902 NA coding downstream 618057 45872819 ~ 45873709 (+)
LOC118964875 NA coding downstream 645157 45899919 ~ 45901120 (+)
LOC110525032 NA coding downstream 703668 45958430 ~ 45959299 (+)
G512310 NA non-coding upstream 1678 45249992 ~ 45250211 (+)
G512308 NA non-coding upstream 3660 45247365 ~ 45248229 (+)
G512306 NA non-coding upstream 8241 45243430 ~ 45243648 (+)
G512263 NA non-coding upstream 14087 45237203 ~ 45237802 (+)
G512299 NA non-coding upstream 15938 45235599 ~ 45235951 (+)
G512316 NA non-coding downstream 13735 45268497 ~ 45268717 (+)
G512354 NA non-coding downstream 63352 45318114 ~ 45380696 (+)
G512392 NA non-coding downstream 125160 45379922 ~ 45448720 (+)
G512418 NA non-coding downstream 160715 45415477 ~ 45416468 (+)
G512524 LOC107756720 non-coding downstream 330931 45585693 ~ 45586219 (+)
G512192 LOC106584908 other upstream 66020 45184439 ~ 45185869 (+)
G510416 NA other upstream 1593396 43657468 ~ 43658493 (+)
G509160 NA other upstream 2681720 42567105 ~ 42570169 (+)
G508559 dph7 other upstream 3119949 42129225 ~ 42131940 (+)
G512912 NA other downstream 380827 45635589 ~ 45636250 (+)
LOC110526042 LOC106584891 other downstream 932238 46076084 ~ 46190292 (+)
G513501 NA other downstream 1105194 46359956 ~ 46360585 (+)
G513745 NA other downstream 1645799 46900561 ~ 46901123 (+)
G514464 NA other downstream 1672080 46926842 ~ 46927714 (+)

Expression



Co-expression Network