G512524 (LOC107756720)


Basic Information

Item Value
gene id G512524
gene name LOC107756720
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 45585693 ~ 45586219 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU581489
agactatactctctgtcggctcccgaacgtaaggctctcgaagattatttgtctgtagctcttgacgccggtaccatagtcccctcctcctctcccgccggagcggggtttttttttgtcaagaagaaggacgggtctctgcgcccctgcatagattatcgagggctgaatgacataacagtgaagaatcgttatccgcttcctcttatgtcttcagccttcgagatcctgcagggagccaggtttttcactaagttggaccttcgtagcgcttaccatctcgtgcgcatcagggagggggacgagtggaagacggcgtttaacacgctaacgctccagctgtctttcaggcattagtcaatgatgtcctgagagacatgctgaacatctttgttttcgtttaccttgacgatatcctgattttttcaccgtcactccagattcatgttcagcacgttcgacgtgtcctccagcgccttttaga

Function

NR:

description
PREDICTED: uncharacterized protein LOC109045530

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU581489 True 484 lncRNA 0.50 2 45585693 45586219

Neighbor

gene id symbol gene type direction distance location
LOC110526028 ccdc60 coding upstream 348749 45187119 ~ 45236944 (+)
LOC110526027 hspb8 coding upstream 406868 45155981 ~ 45178825 (+)
LOC110526025 srrm4 coding upstream 432708 45061658 ~ 45152985 (+)
LOC110526024 suds3 coding upstream 689711 44873385 ~ 44895982 (+)
LOC110526020 NA coding upstream 845121 44730067 ~ 44740687 (+)
si:dkey-174n20.1 LOC106584900 coding downstream 61515 45647734 ~ 45654067 (+)
LOC110526036 LOC106584896 coding downstream 227179 45813398 ~ 45837739 (+)
LOC110526902 NA coding downstream 286600 45872819 ~ 45873709 (+)
LOC118964875 NA coding downstream 313700 45899919 ~ 45901120 (+)
LOC110525032 NA coding downstream 372211 45958430 ~ 45959299 (+)
G512392 NA non-coding upstream 136973 45379922 ~ 45448720 (+)
G512418 NA non-coding upstream 169225 45415477 ~ 45416468 (+)
G512354 NA non-coding upstream 204997 45318114 ~ 45380696 (+)
G512316 NA non-coding upstream 316976 45268497 ~ 45268717 (+)
G512311 xbp1 non-coding upstream 330931 45251889 ~ 45254762 (+)
G512875 NA non-coding downstream 21436 45607655 ~ 45608138 (+)
G512879 NA non-coding downstream 23671 45609890 ~ 45610116 (+)
G512886 NA non-coding downstream 28725 45614944 ~ 45615211 (+)
G512889 NA non-coding downstream 30632 45616851 ~ 45617058 (+)
G512910 NA non-coding downstream 47041 45633260 ~ 45633734 (+)
G512192 LOC106584908 other upstream 399824 45184439 ~ 45185869 (+)
G510416 NA other upstream 1927200 43657468 ~ 43658493 (+)
G509160 NA other upstream 3015524 42567105 ~ 42570169 (+)
G508559 dph7 other upstream 3453753 42129225 ~ 42131940 (+)
G512912 NA other downstream 49370 45635589 ~ 45636250 (+)
LOC110526042 LOC106584891 other downstream 600781 46076084 ~ 46190292 (+)
G513501 NA other downstream 773737 46359956 ~ 46360585 (+)
G513745 NA other downstream 1314342 46900561 ~ 46901123 (+)
G514464 NA other downstream 1340623 46926842 ~ 46927714 (+)

Expression


Co-expression Network