G512988


Basic Information

Item Value
gene id G512988
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 45744949 ~ 45745157 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU582002
tgaatgaatcgtgaataatgagtgagaaagttagacacacaaatacagtatcattaccccccacccccacaaatGCTAACCTCTGATTGTAATGctgagatgttagcatgtcttgaggttatgatatttgtgcgtctaactttctcactcatcattattcacgattcattcaaaattatccgtaatcatggtagcatccacattaatgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU582002 True 209 lncRNA 0.37 1 45744949 45745157

Neighbor

gene id symbol gene type direction distance location
si:dkey-174n20.1 LOC106584900 coding upstream 90882 45647734 ~ 45654067 (+)
LOC110526028 ccdc60 coding upstream 508005 45187119 ~ 45236944 (+)
LOC110526027 hspb8 coding upstream 566124 45155981 ~ 45178825 (+)
LOC110526025 srrm4 coding upstream 591964 45061658 ~ 45152985 (+)
LOC110526024 suds3 coding upstream 848967 44873385 ~ 44895982 (+)
LOC110526036 LOC106584896 coding downstream 68241 45813398 ~ 45837739 (+)
LOC110526902 NA coding downstream 127662 45872819 ~ 45873709 (+)
LOC118964875 NA coding downstream 154762 45899919 ~ 45901120 (+)
LOC110525032 NA coding downstream 213273 45958430 ~ 45959299 (+)
LOC110526904 NA coding downstream 223307 45968464 ~ 45972013 (+)
G512916 NA non-coding upstream 101592 45642804 ~ 45643357 (+)
G512914 NA non-coding upstream 105501 45637367 ~ 45639448 (+)
G512913 NA non-coding upstream 107865 45636848 ~ 45637084 (+)
G512911 NA non-coding upstream 110610 45634086 ~ 45634339 (+)
G512910 NA non-coding upstream 111215 45633260 ~ 45633734 (+)
G513021 NA non-coding downstream 45509 45790666 ~ 45793785 (+)
G513024 NA non-coding downstream 52344 45797501 ~ 45797808 (+)
G513030 NA non-coding downstream 62858 45808015 ~ 45808239 (+)
G513033 NA non-coding downstream 106076 45851233 ~ 45863183 (+)
G513043 LOC100136024 non-coding downstream 158936 45904093 ~ 45906563 (+)
G512912 NA other upstream 108699 45635589 ~ 45636250 (+)
G512192 LOC106584908 other upstream 559080 45184439 ~ 45185869 (+)
G510416 NA other upstream 2086456 43657468 ~ 43658493 (+)
G509160 NA other upstream 3174780 42567105 ~ 42570169 (+)
LOC110526042 LOC106584891 other downstream 441843 46076084 ~ 46190292 (+)
G513501 NA other downstream 614799 46359956 ~ 46360585 (+)
G513745 NA other downstream 1155404 46900561 ~ 46901123 (+)
G514464 NA other downstream 1181685 46926842 ~ 46927714 (+)
G514499 NA other downstream 1277137 47022294 ~ 47023092 (+)

Expression


Co-expression Network