G513363


Basic Information

Item Value
gene id G513363
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46133198 ~ 46141623 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU582416
aaaataaagaaaataccctggaataagtaggtgtgtccaaacttttgactggtactatatattcagaaaacaaaagtgccatttaagatgaatTTATTGAAACtataatatcaactggttattattatattgtggAAAACAATCTTCAAAAAGGTAGTAACCTCAGCAGTGGTGTTCTCTTGTAGAAGCCTATGGCTGTGCAATGCCATAGCCTTGttttgttaatttagcagacaagacgCTCTTATTTTCCAAGCCCTTATCACAGTCAAGACACACCTATTTTCTAGTAAAAAACATGATCTAATATAACAGACTATGTAATACGCATCTCGCATCTGGAACAGTTattctgtaaatgagaacgttTTCTCAGTCAACTTGGTAGtcaacctggtaaaataaatgataaattagaaaaataaaaacattctcaaagagtgatcatttgaaacagggcTCAAGTTGAAAGACAATTTGTTCAGGGTTACAAACCAAATCTCCCTTCTGTTCGATATACAGACATTGCTTATTCTGCCTGCTGTTTGGAATTTTCTAAATGGATGAACAATTCCACATTTGAACACTTCATGGGGATGAATTATGGCCAAAACATATATTTGGTGAGTAGGCCGAGGCTTAATGATTCTGATAAATACACTTTCTTTATCAAACTAATGTTTTTGCATATTTTCAGTGTGGACCCGTGCGATGTTCAGGGGGATTATAGCCTAGGCCAGGGCTGTTCTTGAagaccctgttcctgtagagctacagtcctgtaTTTTTTTTTGACTCGCACCCTAATCTAGCAGACCGTATTTGAATAATTAGCTGGTTTATAAGCTGAACCAGGTTAGGTACACCTGgcgttggagcgaaaacctacaggagggtatctctccaggaacagggttggaggccCCTGGCCTAGGTTAACCAATTATAAGTGGCACTAGCAGTTTGGCAACGTATGtgcgtcactagttaccacagccacaaagtcataaacctcTCCAATTTCTAAAGTGTATCTTCttcaaatctgattttaaacctttaaccacactgctaacattatgcataaccctaaacttaaatTAAGACTTTTTTTTCTAAATAATGCCAAATCTGACTTTGTAAATGCGATTACTAGTGACAACTGCAATGTAGCAGTAGCCTAAATGGAAATTAGACTGGATGCAATTATTCCAAAACTGCAGCTCATTGTTGGAACACATATTTCCCTACTTCAGTCAACCAGCCATTTTGAATTTGTGATAAAACTGTCGTCATTTTGCAAGGAATGTAGCTTGTGTTTAAAGGAAGTGGTCGGGATGCGATTTGAATGAGTGAGACAGAGGGGAAAGGGAATTTAGGGAGAAGAACTGTTTGATACTAGGCTTGGTTTAATTTTTGGACCAATACAATGTGAattgatttatttttttgttgtgccCTGCAACTGCACATGCaattgtaggaaattagcttgaaaactgcaacattttcatCCAGCCATGCCCTGCTGAAGTTATAGTAAAACTCCTATGCTATGTTTGTCTCACTCGAGTTGTgttctgattattattattttacctttatttaactgggcaagtcagttatgagAGGGTCCCTGATTTAATTTGCTATTACAAAAGGGCTCCCTGTTCCCAaaaagtttgagaacccctgctCTTTGTTGTGAGCTGAGGGACACTGGGGAGAAGCAGAGGTGTAACTGACTGACTCACTTCA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU582416 True 1758 lncRNA 0.38 2 46133198 46141623

Neighbor

gene id symbol gene type direction distance location
LOC110526904 NA coding upstream 161185 45968464 ~ 45972013 (+)
LOC110525032 NA coding upstream 173899 45958430 ~ 45959299 (+)
LOC118964875 NA coding upstream 232078 45899919 ~ 45901120 (+)
LOC110526902 NA coding upstream 259489 45872819 ~ 45873709 (+)
LOC110526036 LOC106584896 coding upstream 295459 45813398 ~ 45837739 (+)
LOC110526905 LOC106584888 coding downstream 57896 46199519 ~ 46263098 (+)
ascc2 ascc2 coding downstream 304333 46445956 ~ 46461957 (+)
LOC110526048 sec14l2 coding downstream 329861 46471484 ~ 46514756 (+)
LOC110526049 LOC106570833 coding downstream 400981 46542604 ~ 46567635 (+)
msh3 LOC106584876 coding downstream 433312 46574935 ~ 46708962 (+)
G513043 LOC100136024 non-coding upstream 226635 45904093 ~ 45906563 (+)
G513033 NA non-coding upstream 270015 45851233 ~ 45863183 (+)
G513030 NA non-coding upstream 324959 45808015 ~ 45808239 (+)
G513024 NA non-coding upstream 335390 45797501 ~ 45797808 (+)
G513021 NA non-coding upstream 339413 45790666 ~ 45793785 (+)
LOC110526042 LOC106584891 non-coding downstream 34202 46076084 ~ 46190292 (+)
G513377 NA non-coding downstream 51805 46193428 ~ 46193656 (+)
G513379 NA non-coding downstream 53615 46195238 ~ 46195439 (+)
G513380 NA non-coding downstream 54153 46195776 ~ 46196008 (+)
G513427 NA non-coding downstream 121499 46263122 ~ 46267533 (+)
G512912 NA other upstream 496948 45635589 ~ 45636250 (+)
LOC110526028 ccdc60 other upstream 912416 45187119 ~ 45236944 (+)
G512192 LOC106584908 other upstream 947329 45184439 ~ 45185869 (+)
G510416 NA other upstream 2474705 43657468 ~ 43658493 (+)
G509160 NA other upstream 3563029 42567105 ~ 42570169 (+)
G513501 NA other downstream 218333 46359956 ~ 46360585 (+)
G513745 NA other downstream 758938 46900561 ~ 46901123 (+)
G514464 NA other downstream 785219 46926842 ~ 46927714 (+)
G514499 NA other downstream 880671 47022294 ~ 47023092 (+)

Expression


Co-expression Network