G513925


Basic Information

Item Value
gene id G513925
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46138158 ~ 46140055 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU583012
ttttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgttttaatgggcaggtaccatcacgaatttgtcatgctcaaaattcaaactttactttgctcaaactataccttggtcaacttgtattacatatttctttttgttttacttgtgcataaggcatatgttttctccatttgcaatatgatgtcataggaagtcaaaagtcaaagtcaaaagtaaatattttcctccgtgcacctggtgatctgaaatgtgcacctggtgacctgaaatgtgcacctggtgatctaaaatatgcaactggtaaccccaaaaaaaaaatttgggatgtttttttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgttttaatgggcaggtaccatcacgaatttgtcatgctcaaaattcaaactttactttgctcaaactatacctttgtcaacttgtattacatatttctttttgttttacttgtgcataaggcatatgttttctccatttgcaatatgatgtcataggaagtcaaaagtcaaagtcaaaagtaaatattttcctccgtgcacctggtgatctgaaatgtgcacctggtgacctgaaatgtgcacctggtgatctaaaatatgcaactggtaacccaaaaaaaaaattttgggatgtttttttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgttttaatgggcaggtaccatcacgaatttgtcatgctataaattcaagctttactttgctcaaactatacctttgtcatcttgtgatctaaaatatgcaactggttacctaaaacatttgttgatgtttttttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaaaattttagatgtatttttttttgtttcttactttttcaaagtcactgtgcatttgcaatatgttttaaagggcaggtaccatcacgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaattcaagcttgtgatctaaaatatgcagctggttacccaacattttttgggatgtttttttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaaaattttagatgtatttttttttgtttcttactttttcaaagtcactgtgcatttgcaatatgt
>TU583013
ttttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgttttaatgggcaggtaccatcacgaatttgtcatgctcaaaattcaaactttactttgctcaaactataccttggtcaacttgtattacatatttctttttgttttacttgtgcataaggcatatgttttctccatttgcaatatgatgtcataggaagtcaaaagtcaaagtcaaaagtaaatattttcctccgtgcacctggtgatctgaaatgtgcacctggtgacctgaaatgtgcacctggtgatctaaaatatgcaactggtaaccccaaaaaaaaaatttgggatgtttttttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgttttaatgggcaggtaccatcacgaatttgtcatgctcaaaattcaaactttactttgctcaaactatacctttgtcaacttgtattacatatttctttttgttttacttgtgcataaggcatatgttttctccatttgcaatatgatgtcataggaagtcaaaagtcaaagtcaaaagtaaatattttcctccgtgcacctggtgatctgaaatgtgcacctggtgacctgaaatgtgcacctggtgatctaaaatatgcaactggtaacccaaaaaaaaaattttgggatgtttttttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgttttaatgggcaggtaccatcacgaatttgtcatgctataaattcaagctttactttgctcaaactatacctttgtcatcttgtgatctaaaatatgcaactggttacctaaaacatttgttgatgtttttttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaaaattttagatgtatttttttttgtttcttactttttcaaagtcactgtgcatttgcaatatgttttaaagggcaggtaccatcacgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaattttttagatgtatttttttttgtttccttactttttcaaagtcactgtgcatttgcaatatgttttaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU583012 False 1359 lncRNA 0.33 3 46138158 46140055
TU583013 True 1218 lncRNA 0.33 2 46138404 46140055
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110526039 NA coding downstream 142772 45973773 ~ 45995386 (-)
LOC110526038 LOC106584879 coding downstream 183407 45915772 ~ 45954751 (-)
LOC100136024 LOC100136024 coding downstream 230999 45904051 ~ 45907159 (-)
LOC110526037 LOC106584895 coding downstream 274917 45851230 ~ 45863241 (-)
LOC118965028 NA coding downstream 363230 45765669 ~ 45774928 (-)
apba1a apba1 coding upstream 123066 46263121 ~ 46360886 (-)
LOC110526044 LOC107699739 coding upstream 227646 46367701 ~ 46430607 (-)
rnf215 rnf215 coding upstream 321308 46461363 ~ 46471132 (-)
LOC110526055 samd3 coding upstream 836340 46971364 ~ 46980777 (-)
utp15 utp15 coding upstream 905438 47045493 ~ 47056805 (-)
G513773 NA non-coding downstream 158298 45948042 ~ 45979860 (-)
G513169 NA non-coding downstream 332192 45805734 ~ 45805966 (-)
G513163 NA non-coding downstream 338429 45799460 ~ 45799729 (-)
G513161 NA non-coding downstream 340746 45797178 ~ 45797412 (-)
G513159 NA non-coding downstream 342014 45795802 ~ 45796144 (-)
G513940 NA non-coding upstream 26535 46166590 ~ 46166796 (-)
G513941 NA non-coding upstream 27727 46167782 ~ 46167986 (-)
G513942 NA non-coding upstream 28735 46168790 ~ 46169001 (-)
G513943 NA non-coding upstream 29261 46169316 ~ 46169528 (-)
G513944 NA non-coding upstream 29999 46170054 ~ 46170303 (-)
znrf3 LOC106584905 other downstream 861771 45270568 ~ 45384850 (-)
nf2a nf2 other downstream 1926335 44209338 ~ 44272386 (-)
prodhb LOC100194675 other downstream 2189769 43940790 ~ 43955257 (-)
G510310 NA other downstream 2614050 43523714 ~ 43524108 (-)
G509952 NA other downstream 3012771 43124581 ~ 43125387 (-)
G514434 NA other upstream 770603 46910658 ~ 46910950 (-)
G514777 NA other upstream 876107 47016162 ~ 47016496 (-)
G515094 LOC106585477 other upstream 1834738 47974793 ~ 47976975 (-)

Expression

G513925 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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G513925 Expression in each Bioproject

Bar chart with 15 bars.
G513925 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 125.
End of interactive chart.

Co-expression Network