G513377


Basic Information

Item Value
gene id G513377
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46193428 ~ 46193656 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU582433
CTTGGATTACTGTATAAATTAGTCATAAATCTTAGTAACAACAATAGACaaaaacatagtgtgcttaaactaataacacacaaatgattgtatttttcttgtctatattgaatacatcatttaaacattcacactgtaggtcaaatctacactggagttgcttaccaagaagacagtgaatgttcctgagtggccgagttacagttttgactttaatctacttgaaaat

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU582433 True 229 lncRNA 0.31 1 46193428 46193656

Neighbor

gene id symbol gene type direction distance location
LOC110526042 LOC106584891 coding upstream 3136 46076084 ~ 46190292 (+)
LOC110526904 NA coding upstream 221415 45968464 ~ 45972013 (+)
LOC110525032 NA coding upstream 234129 45958430 ~ 45959299 (+)
LOC118964875 NA coding upstream 292308 45899919 ~ 45901120 (+)
LOC110526902 NA coding upstream 319719 45872819 ~ 45873709 (+)
LOC110526905 LOC106584888 coding downstream 5863 46199519 ~ 46263098 (+)
ascc2 ascc2 coding downstream 252300 46445956 ~ 46461957 (+)
LOC110526048 sec14l2 coding downstream 277828 46471484 ~ 46514756 (+)
LOC110526049 LOC106570833 coding downstream 348948 46542604 ~ 46567635 (+)
msh3 LOC106584876 coding downstream 381279 46574935 ~ 46708962 (+)
G513363 NA non-coding upstream 51805 46133198 ~ 46141623 (+)
G513043 LOC100136024 non-coding upstream 286865 45904093 ~ 45906563 (+)
G513033 NA non-coding upstream 330245 45851233 ~ 45863183 (+)
G513030 NA non-coding upstream 385189 45808015 ~ 45808239 (+)
G513379 NA non-coding downstream 1582 46195238 ~ 46195439 (+)
G513380 NA non-coding downstream 2120 46195776 ~ 46196008 (+)
G513427 NA non-coding downstream 69466 46263122 ~ 46267533 (+)
G513502 NA non-coding downstream 173996 46367652 ~ 46367855 (+)
G513523 NA non-coding downstream 297748 46491404 ~ 46516159 (+)
G512912 NA other upstream 557178 45635589 ~ 45636250 (+)
LOC110526028 ccdc60 other upstream 972646 45187119 ~ 45236944 (+)
G512192 LOC106584908 other upstream 1007559 45184439 ~ 45185869 (+)
G510416 NA other upstream 2534935 43657468 ~ 43658493 (+)
G513501 NA other downstream 166300 46359956 ~ 46360585 (+)
G513745 NA other downstream 706905 46900561 ~ 46901123 (+)
G514464 NA other downstream 733186 46926842 ~ 46927714 (+)
G514499 NA other downstream 828638 47022294 ~ 47023092 (+)
G514662 LOC106597055 other downstream 1109527 47303183 ~ 47329244 (+)

Expression


Co-expression Network