G514424


Basic Information

Item Value
gene id G514424
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46901544 ~ 46903583 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU583542
TCAGGTAGTGATTTATTTTCAAGCTGAAGAGAGGCACGACTATAtagtcatattttttttaaatgaagttgTACATGTGCCCTTTATGACAGAATTTTTTGGGGTGAAATCAAATGGTTTTTTTTAACCATAATTTAAATGACATCACTAACCATATTCGCATCCACAGTCTTTATACGAGTATAGTCATAccgtatataaaaaaaatcaagacagcggtgatggaaacaggaagtttcggtTCAGTTTTATAAATGCCGACAGAAAATGTGTTCGTTGGTGGGATATTTTTGTGTCTTAATTTTGTGTCTTAAATTAATTATGCGTGACATGGCAGTGGAAccgcctttatgcgcaaatattgatatataaTAACAATCAaattgaagtaaacttggagtcacgcaataatatggtgtgtggtcctcccactacgactcgggaaagcatgcagtttataaGGCTACAGATGAAATCATTTATGATGATcttcacagggtggtgacagTAATCTTGAtgttcctttccaataaatattgagggtctgattcaggtgacatgatgatcttgactgccgtttgacaaatacaaatattctcgctcttatccataataatctcatcatgtagactagcctacccgcactgtatctacGAACTGTAGGCTAGAGTGCATGTGCCAAGACCAAAGTAGGCACACAGCTTTTGTGAGGAAACTattggtagagttgaaaatgcaatggaaacacgTTGAACTGtagatttttattcggtacatgtaaacttaagcgaaaaagtacattttgtgtgcactacgtcatcattCACTGATTTTTATACGCCACAAGTCTGTTTGGAAAATGCATATATTTTCTTTACGTCAATTTtataatattcacatggaaatctgttgccaattggattgaaACCTAGCTAGTGCCAAAGTTTTGGCTTTGGTGGCAAATTCTCCATTGATCAACACGTAAAGAGTCATTTAAGAATCCTCTGAAGGGACAGACTATGTCATATGCCGAATTAGGAACCACTTTGGCCACCCTGTCGACTAGATGTCGTAGTCATGCATTTCTGGAATTGTCAGGCATTACATGCACTTTAACAAAGATGCAAATGCATGTACATGCATCTCTGGAATAAATGTTAAGGCATTACATGCATTTTAACAAAGATGTAAATGTATGTACATCTAAGTTAAATATATTGAGAAAAAAGATGTATGGGATGAATGCACtaatgtaagttgctctggatgagagcatctgctaaatgactaaaatgtaaaatatatatgttttaatcCAAGTAAAGATGTACTGATGAGTTCGGAATTCCATGATCGGAACTCAAGAGCTGCATTAACTGTATGTAACCTCTAAAGCAACCTCTATCGCTTCATGCAGACAGCTACTGTCAGACTCATATAGACTAGACTAGAACACTCAAGTGACCATGTAAAGCCAATGAAGACAAAATTAAATTTGTGAGGACAACAAAGGATTCCCAGCTAGCTCATAATGTCCCCATAGTGTTCCCTTGAGGTTCTCCTTTGGTTATTTGAAAAATGACTTTCCCACATCGTTCTGGGAACCAACATTTGTTTGCTGGGTTTTCATTTTTCAATTAGGAGCAAACTGCAACAGGACCACATGCTCATCAAACTGCATAAGGAGTGGTTATTGTAAAGCTGTGAACAGGCCCTGCTGAACGTGCTACAAGTGTTGTTGTCAGATAAAGCATGGGAATGTTGGGGCCACTAGAGGGACATAAAGTCACTTCTCTTTAACCACCCTCACTCCATGGCAGTACAATAGTTTTATATGGCTGAATCTCAATTGTATATCCTTGATCCCAAAGAGATCCTATTCAATTATATGTAGTTCTACGTAATTCTATCCTTGTCATTTCTCCTTGCCTCCTTCTGAGAGGAGGATCTTTTGCTCCAAAGTGCTTTGAGAAGGAGATAAGGATTTGAGGAATGAAGGAATAAcaattgatacagtgccttgcgaaagtattcggcccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU583542 True 2040 lncRNA 0.38 1 46901544 46903583

Neighbor

gene id symbol gene type direction distance location
rnf215 rnf215 coding downstream 430412 46461363 ~ 46471132 (-)
LOC110526044 LOC107699739 coding downstream 470937 46367701 ~ 46430607 (-)
apba1a apba1 coding downstream 541562 46263121 ~ 46360886 (-)
LOC110526039 NA coding downstream 906158 45973773 ~ 45995386 (-)
LOC110526038 LOC106584879 coding downstream 946793 45915772 ~ 45954751 (-)
LOC110526055 samd3 coding upstream 72812 46971364 ~ 46980777 (-)
utp15 utp15 coding upstream 141910 47045493 ~ 47056805 (-)
LOC118965029 NA coding upstream 443251 47346834 ~ 47349012 (-)
LOC118965030 NA coding upstream 448128 47351711 ~ 47353889 (-)
LOC118964878 LOC106585477 coding upstream 603580 47507163 ~ 47511010 (-)
G514363 NA non-coding downstream 99698 46801577 ~ 46801846 (-)
G514184 NA non-coding downstream 327308 46573241 ~ 46574236 (-)
G514134 NA non-coding downstream 351753 46487166 ~ 46549791 (-)
G514155 NA non-coding downstream 374464 46526008 ~ 46527080 (-)
G514085 NA non-coding downstream 389416 46510047 ~ 46512128 (-)
G514430 NA non-coding upstream 5793 46909376 ~ 46909721 (-)
G514435 NA non-coding upstream 7553 46911136 ~ 46911475 (-)
G514445 NA non-coding upstream 12722 46916305 ~ 46916540 (-)
G514737 NA non-coding upstream 20443 46924026 ~ 46924560 (-)
G514744 NA non-coding upstream 24416 46927999 ~ 46928331 (-)
znrf3 LOC106584905 other downstream 1625157 45270568 ~ 45384850 (-)
nf2a nf2 other downstream 2689721 44209338 ~ 44272386 (-)
prodhb LOC100194675 other downstream 2953155 43940790 ~ 43955257 (-)
G514434 NA other upstream 7075 46910658 ~ 46910950 (-)
G514777 NA other upstream 112579 47016162 ~ 47016496 (-)
G515094 LOC106585477 other upstream 1071210 47974793 ~ 47976975 (-)
G515122 LOC106585477 other upstream 1360410 48263993 ~ 48264977 (-)
LOC110512142 LOC106585477 other upstream 1389263 48292846 ~ 48318495 (-)

Expression


Co-expression Network