G513746


Basic Information

Item Value
gene id G513746
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46901550 ~ 46903598 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU582824
gaatactttcgcaaggcactgtatcaattgTTATTCCTTCATTCCTCAAATCCTTATCTCCTTCTCAAAGCACTTTGGAGCAAAAGATCCTCCTCTCAGAAGGAGGCAAGGAGAAATGACAAGGATAGAATTACGTAGAACTACATATAATTGAATAGGATCTCTTTGGGATCAAGGATATACAATTGAGATTCAGCCATATAAAACTATTGTACTGCCATGGAGTGAGGGTGGTTAAAGAGAAGTGACTTTATGTCCCTCTAGTGGCCCCAACATTCCCATGCTTTATCTGACAACAACACTTGTAGCACGTTCAGCAGGGCCTGTTCACAGCTTTACAATAACCACTCCTTATGCAGTTTGATGAGCATGTGGTCCTGTTGCAGTTTGCTCCTAATTGAAAAATGAAAACCCAGCAAACAAATGTTGGTTCCCAGAACGATGTGGGAAAGTCATTTTTCAAATAACCAAAGGAGAACCTCAAGGGAACACTATGGGGACATTATGAGCTAGCTGGGAATCCTTTGTTGTCCTCACAAATTTAATTTTGTCTTCATTGGCTTTACATGGTCACTTGAGTGTTCTAGTCTAGTCTATATGAGTCTGACAGTAGCTGTCTGCATGAAGCGATAGAGGTTGCTTTAGAGGTTACATACAGTTAATGCAGCTCTTGAGTTCCGATCATGGAATTCCGAACTCATCAGTACATCTTTACTTGgattaaaacatatatattttacattttagtcatttagcagatgctctcatccagagcaacttacattaGTGCATTCATCCCATACATCTTTTTTCTCAATATATTTAACTTAGATGTACATACATTTACATCTTTGTTAAAATGCATGTAATGCCTTAACATTTATTCCAGAGATGCATGTACATGCATTTGCATCTTTGTTAAAGTGCATGTAATGCCTGACAATTCCAGAAATGCATGACTACGACATCTAGTCGACAGGGTGGCCAAAGTGGTTCCTAATTCGGCATATGACATAGTCTGTCCCTTCAGAGGATTCTTAAATGACTCTTTACGTGTTGATCAATGGAGAATTTGCCACCAAAGCCAAAACTTTGGCACTAGCTAGGTttcaatccaattggcaacagatttccatgtgaatattataAAATTGACGTAAAGAAAATATATGCATTTTCCAAACAGACTTGTGGCGTATAAAAATCAGTGaatgatgacgtagtgcacacaaaatgtactttttcgcttaagtttacatgtaccgaataaaaatctaCAGTTCAAcgtgtttccattgcattttcaactctaccaatAGTTTCCTCACAAAAGCTGTGTGCCTACTTTGGTCTTGGCACATGCACTCTAGCCTACAGTTCgtagatacagtgcgggtaggctagtctacatgatgagattattatggataagagcgagaatatttgtatttgtcaaacggcagtcaagatcatcatgtcacctgaatcagaccctcaatatttattggaaaggaacaTCAAGATTActgtcaccaccctgtgaagATCATCATAAATGATTTCATCTGTAGCCttataaactgcatgctttcccgagtcgtagtgggaggaccacacaccatattattgcgtgactccaagtttacttcaattTGATTGTTAttatatatcaatatttgcgcataaaggcggTTCCACTGCCATGTCACGCATAATTAATTTAAGACACAAAATTAAGACACAAAAATATCCCACCAACGAACACATTTTCTGTCGGCATTTATAAAACTGAaccgaaacttcctgtttccatcaccgctgtcttgattttttttatatacggTATGACTATACTCGTATAAAGACTGTGGATGCGAATATGGTTAGTGATGTCATTTAAATTATGGTTAAAAAAAACCATTTGATTTCACCCCAAAAAATTCTGTCATAAAGGGCACATGTAcaacttcatttaaaaaaaatatgactaTATAGTCGTGCCTCTCTTCAGCTTGAAAATAAATCACTACCTGACTACCGATAATGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU582824 True 2049 lncRNA 0.38 1 46901550 46903598

Neighbor

gene id symbol gene type direction distance location
rasgrf2b rasgrf2 coding upstream 1546 46722960 ~ 46900004 (+)
msh3 LOC106584876 coding upstream 192588 46574935 ~ 46708962 (+)
LOC110526049 LOC106570833 coding upstream 333915 46542604 ~ 46567635 (+)
LOC110526048 sec14l2 coding upstream 386794 46471484 ~ 46514756 (+)
ascc2 ascc2 coding upstream 439593 46445956 ~ 46461957 (+)
LOC118964876 NA coding downstream 27486 46931084 ~ 46935277 (+)
LOC110526054 NA coding downstream 53904 46935543 ~ 46978128 (+)
LOC110526907 NA coding downstream 89998 46993596 ~ 47004352 (+)
si:dkey-88e18.2 il12b coding downstream 207214 47110812 ~ 47119011 (+)
LOC110526052 hic2 coding downstream 247302 47150900 ~ 47217434 (+)
G513619 NA non-coding upstream 204176 46646968 ~ 46697374 (+)
G513523 NA non-coding upstream 385391 46491404 ~ 46516159 (+)
G513502 NA non-coding upstream 533695 46367652 ~ 46367855 (+)
G513427 NA non-coding upstream 634017 46263122 ~ 46267533 (+)
G513380 NA non-coding upstream 705542 46195776 ~ 46196008 (+)
G513748 NA non-coding downstream 2091 46905689 ~ 46905904 (+)
G513749 NA non-coding downstream 2923 46906521 ~ 46906796 (+)
G514426 NA non-coding downstream 3516 46907114 ~ 46907423 (+)
G514427 LOC100380853 non-coding downstream 4279 46907877 ~ 46908171 (+)
G514433 NA non-coding downstream 6935 46910533 ~ 46910911 (+)
G513745 NA other upstream 427 46900561 ~ 46901123 (+)
G513501 NA other upstream 540965 46359956 ~ 46360585 (+)
LOC110526042 LOC106584891 other upstream 711258 46076084 ~ 46190292 (+)
G512912 NA other upstream 1265300 45635589 ~ 45636250 (+)
LOC110526028 ccdc60 other upstream 1680768 45187119 ~ 45236944 (+)
G514464 NA other downstream 23244 46926842 ~ 46927714 (+)
G514499 NA other downstream 118696 47022294 ~ 47023092 (+)
G514662 LOC106597055 other downstream 399585 47303183 ~ 47329244 (+)
G514665 NA other downstream 402840 47306438 ~ 47320050 (+)
LOC118964881 LOC106585521 other downstream 610188 47425001 ~ 47519480 (+)

Expression


Co-expression Network