G514427 (LOC100380853)


Basic Information

Item Value
gene id G514427
gene name LOC100380853
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46907877 ~ 46908171 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU583545
accccgtagtgccggaagacgtgggtaaatagagcctccgcagtctgtagggccgtagggagaccaggcaatgggaggagacggcaggacttagagaaccgatccacaacgaccagaacggtagtgttcccctgagatgggggaagatcagtaagAAAATCTACCGATAGATGAGACCATGGCTGTTGTGGAACCGGGAGGGGTtataacttccctctaggcaggtgccTAGGAGACTTACTCTGAGTGTatactgaacaggaggagacataaagcctcacgtccttagctaagg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU583545 True 295 lncRNA 0.53 1 46907877 46908171

Neighbor

gene id symbol gene type direction distance location
rasgrf2b rasgrf2 coding upstream 7873 46722960 ~ 46900004 (+)
msh3 LOC106584876 coding upstream 198915 46574935 ~ 46708962 (+)
LOC110526049 LOC106570833 coding upstream 340242 46542604 ~ 46567635 (+)
LOC110526048 sec14l2 coding upstream 393121 46471484 ~ 46514756 (+)
ascc2 ascc2 coding upstream 445920 46445956 ~ 46461957 (+)
LOC118964876 NA coding downstream 22913 46931084 ~ 46935277 (+)
LOC110526054 NA coding downstream 49331 46935543 ~ 46978128 (+)
LOC110526907 NA coding downstream 85425 46993596 ~ 47004352 (+)
si:dkey-88e18.2 il12b coding downstream 202641 47110812 ~ 47119011 (+)
LOC110526052 hic2 coding downstream 242729 47150900 ~ 47217434 (+)
G514426 NA non-coding upstream 454 46907114 ~ 46907423 (+)
G513749 NA non-coding upstream 1081 46906521 ~ 46906796 (+)
G513748 NA non-coding upstream 1973 46905689 ~ 46905904 (+)
G513746 NA non-coding upstream 4279 46901550 ~ 46903598 (+)
G513619 NA non-coding upstream 210503 46646968 ~ 46697374 (+)
G514433 NA non-coding downstream 2362 46910533 ~ 46910911 (+)
G514436 NA non-coding downstream 4431 46912602 ~ 46912854 (+)
G514440 NA non-coding downstream 6798 46914969 ~ 46915260 (+)
G514449 NA non-coding downstream 11453 46919624 ~ 46920554 (+)
G514460 NA non-coding downstream 21227 46929398 ~ 46929786 (+)
G513745 NA other upstream 6754 46900561 ~ 46901123 (+)
G513501 NA other upstream 547292 46359956 ~ 46360585 (+)
LOC110526042 LOC106584891 other upstream 717585 46076084 ~ 46190292 (+)
G512912 NA other upstream 1271627 45635589 ~ 45636250 (+)
LOC110526028 ccdc60 other upstream 1687095 45187119 ~ 45236944 (+)
G514464 NA other downstream 18671 46926842 ~ 46927714 (+)
G514499 NA other downstream 114123 47022294 ~ 47023092 (+)
G514662 LOC106597055 other downstream 395012 47303183 ~ 47329244 (+)
G514665 NA other downstream 398267 47306438 ~ 47320050 (+)
LOC118964881 LOC106585521 other downstream 605615 47425001 ~ 47519480 (+)

Expression


Co-expression Network