G514453


Basic Information

Item Value
gene id G514453
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46933793 ~ 46998665 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU583578
aatgtgggaagagttttactgcATCAAGCCATCAGattgtacaccagagaacacacacaggagagaaaccatatagctgtaatcaatgtgggaagagttttaaaaGATCTAACCATCTTATTTTACaccaaagaacacacacaggagagaaaccttatagctgtgctcaatgtgggaagagttttattaTGTCTGGTCAGCTGAAGGCACACcatagaacacacacaggagagaaaccttatagctgtattcaatgtgggaagagttttgctagATCTAGCCGTTTAACtgcacaccagagaacacacacagtaaagaaatctcatagctgtaatcaatgtgggaagagatactCTCATAAAAGATCTCTGactaaacatcagaaaatacatggaGTTGTTTCACGATATCAATGAATTAATGTCACAGTGTAGAATATTAACACATTGTAggaggagtattttaatgatgtcacaatgtagaacccTAAATGTTTGCCCCCTTATCAATTGATTTCAGCATGATATTAGCCTTGGgaaaaatccaggctctgaattgaGAGAGTACTATTTATGAGATTTAACAAAAAGTGACTAACAAGAAAAGAGTTGTTACACTTACCACATTGGTGACGCtcttgaatcaaaatgcaacacttcaaaatgtagcgatttgttttctacaaattgtcctctaaccagggatgtacacattattcccagattccgtgtggtttttgagctgttagttttaacaggatgTGCAACCTCATCTCCCTTGTCTCGCACAATTGATTTCAACATGTAATCGATGAGTGATGACAAATAAGTGTTGCGTTCCTTTATTTAGCGACCCCTAAACTTAAATGCATCTctccaaaatgtagctgactgtcttctgcatgttgtcctctaaccagtgaggtgAAAGATATTTCCTtttttcatgtgttttttttttagttGTGTTTCAAGTTTTCGCTTTTGGTGCTTGTATAAGTAAATACAAGTAATGTGATTATTGTGGCAGATGTTTGTGTAGATAGTACATTTTATGTTAAGGATTTCAATTTATCATAAACTTTTTCTGACATTGGGGCTATCCACCTAGCAAAATGTTGAAAACATACAATATAAGTTTGGTTTTAGTTGAAagtgaaagttgaaaagaactatTTAATTTCAACGTACTTGCAGCCTATACACATGGTCGCAGTATAATAAATTGGTCTATAATCAATTTTATGAACAGTCCtacatcactccagtatttatTTACAACATTCAAGTGCTAAATGTCTTTATTCCAATAATGACGAAGCATGACTCAAATCACCTACAAATATTTCAATTTAGTTAATTATTGCTAATACATATTAACAAAGGGGTGTACATTTGGTTTTGATATTTCATATTTACAATTCATGTAACATTTAGTAATCATAATTATTTATGC
>TU583580
TGAAAATCTGTTGAAAGTAGACTATGCAACCAAATATTTAATATTTACATTTCATGTAACATTTAGTAATGATAATTATTCATGCAACTAACTGACCATTTTTTTTGTACAATTATAATGACATTGTTGCCCTGCTTTTATAATATCAGGGTTCATTCTCAGATGTGCCAAACCAAATGTACTCGAGCATGACATTGGGGACTGGGCCCAGATCCAACAACATGCCTATCTAGTGAAccctggaaagagagagaaggtccGCAGTGAGGTGGAAAATTACTACGGATATTGCAGGAGTTTCCTCTTGAAATCAGACAAGTCTCTGGTGAGGACAACTTGGTTACTGATTGTCTTAAGTTAAAAAGTTTTCTGTTTAGCCAGTGgatcacaatttattttgacTGCATGTTTTTCTTTATTGGAGATGAGTTTTGTTTGGACTCATTCCAAggggacgagagttctagaagctagtgagtttTAGGATTTaggaaaaggagaaaaaaaatgtgattgtatattattatttagAAGTAGGtgctttttcttgtttttaattgttgacagccagtagacacCATGTTTATATTGTAGAAGGTGAAGTGTAGTTGATTATAAtgtgaaatggaagttgtttTTTAGTCAGTTGTTCAGCTGAAATGTGTCTTCGGCACACAGATTGGTGTCACcccgttagtcagtatgtgttacacctgtgctgccttgtccatctcgttagtggaaaggtgtttcacctgagctggtccaggttctatttaagagtgtctggcccagtgctccagttgtcttgatagatgtggagagtcaacacctttagttgcgCTACCTTTTTGGTTTTCTTCCTGTCTAAGTTAGGtttgggtttttcttttgtttgcctcttcttgggcagatttagtgggtctcatggtgggtgtcttttaggtcccagttgttgttactagtcGCCTTTCAGTGGAAACCCCCATAGTGTCTTTCAGAGCCCCTCCtaaaaaacaagcttatattttggggttTGATATTGCGTCCAATTTATATTTTAATCAATGGCATTTCCTAAGAATGCTCATTAGTCTTTCAGTTATTATTGTTTGTGGACTAAATCTTTTTTATTTTCATAGTTTTTTCCTGTGAATCCGTTGtgttgtataaataaagcttgatttgaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU583578 False 1455 lncRNA 0.34 3 46933793 46976567
TU583580 True 1190 lncRNA 0.37 2 46934968 46998665

Neighbor

gene id symbol gene type direction distance location
rasgrf2b rasgrf2 coding upstream 33789 46722960 ~ 46900004 (+)
msh3 LOC106584876 coding upstream 224831 46574935 ~ 46708962 (+)
LOC110526049 LOC106570833 coding upstream 366158 46542604 ~ 46567635 (+)
LOC110526048 sec14l2 coding upstream 419037 46471484 ~ 46514756 (+)
ascc2 ascc2 coding upstream 471836 46445956 ~ 46461957 (+)
si:dkey-88e18.2 il12b coding downstream 112147 47110812 ~ 47119011 (+)
LOC110526052 hic2 coding downstream 152235 47150900 ~ 47217434 (+)
LOC118964877 NA coding downstream 396702 47395367 ~ 47398426 (+)
LOC110526909 LOC106585521 coding downstream 422576 47421241 ~ 47424219 (+)
LOC110526910 LOC106585521 coding downstream 452180 47450664 ~ 47494972 (+)
G514465 NA non-coding upstream 665 46932202 ~ 46933128 (+)
G514460 NA non-coding upstream 4007 46929398 ~ 46929786 (+)
G514449 NA non-coding upstream 13239 46919624 ~ 46920554 (+)
G514440 NA non-coding upstream 18533 46914969 ~ 46915260 (+)
G514436 NA non-coding upstream 20939 46912602 ~ 46912854 (+)
LOC110526907 NA non-coding downstream 3002 46993596 ~ 47004352 (+)
G514486 NA non-coding downstream 6641 47005306 ~ 47005664 (+)
G514487 NA non-coding downstream 7176 47005841 ~ 47006197 (+)
G514493 NA non-coding downstream 17945 47016610 ~ 47016813 (+)
G514494 NA non-coding downstream 18322 47016987 ~ 47017236 (+)
G514464 NA other upstream 6079 46926842 ~ 46927714 (+)
G513745 NA other upstream 32670 46900561 ~ 46901123 (+)
G513501 NA other upstream 573208 46359956 ~ 46360585 (+)
LOC110526042 LOC106584891 other upstream 743501 46076084 ~ 46190292 (+)
G512912 NA other upstream 1297543 45635589 ~ 45636250 (+)
G514499 NA other downstream 23629 47022294 ~ 47023092 (+)
G514662 LOC106597055 other downstream 304518 47303183 ~ 47329244 (+)
G514665 NA other downstream 307773 47306438 ~ 47320050 (+)
LOC118964881 LOC106585521 other downstream 515121 47425001 ~ 47519480 (+)
G515069 NA other downstream 951341 47950006 ~ 47952254 (+)

Expression


Co-expression Network