G514459


Basic Information

Item Value
gene id G514459
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46968924 ~ 46973262 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU583587
GGACCCTTTGtcaacacggagccccgccgatccatcaagACTGGTCTGCCGACGGTATGCCCTCAACCGGCCTTTGCAGTACGTTGGTGAAGAccttgtcccgaagctagcaccagttagcctcgagccaggcacatctcccggctagcGTAGTAATGACTACCTAACGGCTTCCCTGGTTCATATATTCCTGTTGACTGGACCCtacgatcacttggctacatagctgatgcctgctggattgttcattaatcacgggtctccattttgtttatctgtcggccccagcctcaaactcaggccctgtgtgtagttaactgaccctctctgcccattcattgccAGTTTACCTGTTGTCGTAGCTAATTaactctcccaatcaacacctgtgattgctttatgcctcgctttatgtctctctctaatgtccatatgccttgtatactgttgtttatggtagttatcattgttttattttactgcggagcccctagtcccactcaacatggcTCAGagagctcttttgtcccacctcccacacatgcggtgacctcacctagcAGCACTagtgcctccagagatgcaacctctcttatcgtcactcaatgcctaggtttacctccactgtacccgcaccctaccatacccctgtctgtacattatgccttgaatctatcctaccacgcccagaaatctgctcattttattctctgttccaaacgcactagatgaccagtcctgatagcctttagccgtaccctcatcctactactctgttcctcgggtgatgtagaggttaacccaggacctgtgtgtccccaggcactctcatttgttgacttctgtaatcgaaaaagccttggtttcatgcatgttaagaTCAGAATCcttctccctaagtttgttttactcactgctttagcacactccgcctaCCTtaatgtccttgccgtgtctgcaTCCTGGCTTAAGAAGGCAACCAAACATTCTGAATTTTCATCCTCAAccacaacattttccgtcaagattgCAACTCCTCTCTTTTTGACAGTTCTATCTACTGCAGAGatggcctgcaaagttctgtcatactttccatgttcatgcccaaacagttcgagcttctaatttaaaaaatgaatctctccagaaataagtctcactgttgccgcctgttatagacccccctcggCTCCCATcggtgccctggacaccatatgtgaattgattgccccctatCTATCTTCAGCGTTCGTTCTATTAAGTGACCTAACcagggatatgcttaacaccccggccgtcctacaatccaagctagatgccctcaatctcacacaaattatcaaggaacccaccaggtacaaccctaaatccataaacatgggcaccctaatagatattatcctgaccaacttgccctccaaatacacctctgctgttttaaatcaggatctcagcgatcgtTGCCTGCATCCgatatgggtccgcggtcaatagaccacccctcatcactgtcaaacgctccctaaaacacttctgcaaacaggtctttctaatcgacctggcccgggtatcctggaaggatttttacgtcatcccgtcagtagaggatgcctggttgttctttaaaagtaatttcctcaccatcttaaataagcatgcccctttctaagaacagatatagcccttggttcactccagacctgactgccctcgaccagcacaaaaacatcctgtggcgtactgcactagcatcaaatagtccccgtgatatgcatcTTTTCAGacaagtcaggaaccaatacactcagtcagttaggaaagcaaaggctagctttttcgaacagaaatgtgcatcctgtagctctaacttcaaaagttctgggacactgtaaagtccatggagaagaagagcacctcatcccagttgcccactgcactgaggctaggaaacactgtcaccaccgataactccacgataatcgagaatttcaagaagcatttctctatggctgaCCAGagactcttaaatagaacctggaccagctggctaccccaaccccggccaacagctccgcactcCCGCAGCTActttcccaagcctccccagcttctccttcacccaaatccagatagctgatgttcttaaagagctgcaaaacctggacctgtacaaatctgctgggctagacaatctggaccctctgtttctaaaattatctgccgccattgtggcaacccctattactagtctgttcaacctctttcctATCTTCCgaattcctaaagattggaacgctgccgtggtcatcccactcttcaaaggggtgacactctagacccaaactgttacagacctatatccatcctgccctgcctttctaaagtcttcgaaagccatgttaacaaacagatcactgaccatttcaaatcccaccgtaccttctcaaatcaaatcaaatttatttaaatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactcccatgaaaggccaaaacctaggaagaaacctagagaggaatatGTGCTatggctatgtggggtggccagtcctcttctggctgtgcccggtggagattataacagaacatggccaagatgttcaaatgttcataaatgaccagcatggtcgaataataaaaaggcagaacagttgaaactggagcatcagcacggccaggtggactggggacagcaaggagtcatcatgtcaggtagtcctggggcatggtcctagggctcaggtcctccgagagagagaaagaaagagagaaggagagaattagagaacgcacacttagattcacacaggacaccgaataggacaggagaagtactctagatataacaaactgaccctagccccccgacacataaactactgcagcataaatactggaggctgggacaggaggggtcaggagacactgtggccccatccgaggacacccccggacagggccaaacaggaaggatataacccacccactttgccaaagcacagcccccacaccactagagggatatcttcaaccaccaacttaccatcctgagacaaggctgagtatagcccacatagacctccgccacggcacaacccaaggggggcggggggcaccaacccagacaggatgaccacatcagtgaatcaacccactcaggtgacgtaCCCCCTGTGCAATCCGGTGTTCGAGCTGgccacgggtgcacctcagccactctcaaagtactaaacgatatcataaccgccatcgataaaagacagtactgtgcagccgtcttcatcgacctggccaaggctttcgactctgtcaatcaccgtattcttatcggcagactcaacagccgaTAATAACAACCGATCAATCaacaaccgatcgctgcccacacccgcccgactagcatcactactctggacggttctaacttagaatatgtggacaactacaatacataggtgtctggttagactataaactctccttctagactaATATTtagcatttccaatccaaaattaaatctagaaccggattcctatttcgcaacaaagcctccttcactcacgctgccaaacataccctggtaaaacttgactatcctaccgatccttaacttcggtgatgtcatttacaaaatagcctccaacactctactcagcaaactggatgcagtctatcacaatgccatccgttttgtcactaaagccccatataccacccactactgcgacctgtatgctcttgtctgctggccctcgctacatattcgtcaccaaacccactggccccaggtcatctataagtctttgctaggtaaagctcctccttaactcagctcactggtaaccatagcaacacccacccatagcacacgctccaggaggtatatctcactggtcatccccaaagccaacacctcctttggccgcctttcctacagttctctgctgccaatgactggaacgaattgcaaaaatcgctgaagttggagaca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU583587 True 4095 lncRNA 0.48 2 46968924 46973262

Neighbor

gene id symbol gene type direction distance location
LOC118964876 NA coding upstream 33647 46931084 ~ 46935277 (+)
rasgrf2b rasgrf2 coding upstream 68920 46722960 ~ 46900004 (+)
msh3 LOC106584876 coding upstream 259962 46574935 ~ 46708962 (+)
LOC110526049 LOC106570833 coding upstream 401289 46542604 ~ 46567635 (+)
LOC110526048 sec14l2 coding upstream 454168 46471484 ~ 46514756 (+)
LOC110526907 NA coding downstream 20334 46993596 ~ 47004352 (+)
si:dkey-88e18.2 il12b coding downstream 137550 47110812 ~ 47119011 (+)
LOC110526052 hic2 coding downstream 177638 47150900 ~ 47217434 (+)
LOC118964877 NA coding downstream 422105 47395367 ~ 47398426 (+)
LOC110526909 LOC106585521 coding downstream 447979 47421241 ~ 47424219 (+)
G514465 NA non-coding upstream 35796 46932202 ~ 46933128 (+)
G514460 NA non-coding upstream 39138 46929398 ~ 46929786 (+)
G514449 NA non-coding upstream 48370 46919624 ~ 46920554 (+)
G514440 NA non-coding upstream 53664 46914969 ~ 46915260 (+)
G514436 NA non-coding upstream 56070 46912602 ~ 46912854 (+)
G514486 NA non-coding downstream 32044 47005306 ~ 47005664 (+)
G514487 NA non-coding downstream 32579 47005841 ~ 47006197 (+)
G514493 NA non-coding downstream 43348 47016610 ~ 47016813 (+)
G514494 NA non-coding downstream 43725 47016987 ~ 47017236 (+)
G514464 NA other upstream 41210 46926842 ~ 46927714 (+)
G513745 NA other upstream 67801 46900561 ~ 46901123 (+)
G513501 NA other upstream 608339 46359956 ~ 46360585 (+)
LOC110526042 LOC106584891 other upstream 778632 46076084 ~ 46190292 (+)
G512912 NA other upstream 1332674 45635589 ~ 45636250 (+)
G514499 NA other downstream 49032 47022294 ~ 47023092 (+)
G514662 LOC106597055 other downstream 329921 47303183 ~ 47329244 (+)
G514665 NA other downstream 333176 47306438 ~ 47320050 (+)
LOC118964881 LOC106585521 other downstream 540524 47425001 ~ 47519480 (+)
G515069 NA other downstream 976744 47950006 ~ 47952254 (+)

Expression


Co-expression Network