G514486


Basic Information

Item Value
gene id G514486
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47005306 ~ 47005664 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU583615
ctctacattaactaacattcCCGTCAACTGTACATGTTTTTTGCATGATTAGTTATCCCTTACATTTGTTTCCATCCTAGTATTTCTGTCAGTCATCTTTGAtccagttcagttctgtgtaggggtacccctctctcctggtaTTTCTCTCCGCCGTCTTTGATCCAGTTCAGTTCTGTGGAGGGGTACCCCTCTCTCCTAGTACTTCTGTCCACCATCTTAGATCCACTTCAGTTCTGTGTAGGGGTACCACTCTCTCCTAGTTTTTCTGTCCatcatctttgctgaagaaagtccaACAGTCACTAGCGAAGCAGCAGCCTCCCCTGGTCCTAGTGCCGTACCGGTAGGAAGTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU583615 True 359 lncRNA 0.46 1 47005306 47005664

Neighbor

gene id symbol gene type direction distance location
LOC110526907 NA coding upstream 954 46993596 ~ 47004352 (+)
LOC110526054 NA coding upstream 27178 46935543 ~ 46978128 (+)
LOC118964876 NA coding upstream 70029 46931084 ~ 46935277 (+)
rasgrf2b rasgrf2 coding upstream 105302 46722960 ~ 46900004 (+)
msh3 LOC106584876 coding upstream 296344 46574935 ~ 46708962 (+)
si:dkey-88e18.2 il12b coding downstream 105148 47110812 ~ 47119011 (+)
LOC110526052 hic2 coding downstream 145236 47150900 ~ 47217434 (+)
LOC118964877 NA coding downstream 389703 47395367 ~ 47398426 (+)
LOC110526909 LOC106585521 coding downstream 415577 47421241 ~ 47424219 (+)
LOC110526910 LOC106585521 coding downstream 445181 47450664 ~ 47494972 (+)
G514453 NA non-coding upstream 6641 46933793 ~ 46998665 (+)
G514459 NA non-coding upstream 32044 46968924 ~ 46973262 (+)
G514465 NA non-coding upstream 72178 46932202 ~ 46933128 (+)
G514487 NA non-coding downstream 177 47005841 ~ 47006197 (+)
G514493 NA non-coding downstream 10946 47016610 ~ 47016813 (+)
G514494 NA non-coding downstream 11323 47016987 ~ 47017236 (+)
G514495 NA non-coding downstream 11646 47017310 ~ 47017547 (+)
G514496 NA non-coding downstream 12583 47018247 ~ 47018559 (+)
G514464 NA other upstream 77592 46926842 ~ 46927714 (+)
G513745 NA other upstream 104183 46900561 ~ 46901123 (+)
G513501 NA other upstream 644721 46359956 ~ 46360585 (+)
LOC110526042 LOC106584891 other upstream 815014 46076084 ~ 46190292 (+)
G512912 NA other upstream 1369056 45635589 ~ 45636250 (+)
G514499 NA other downstream 16630 47022294 ~ 47023092 (+)
G514662 LOC106597055 other downstream 297519 47303183 ~ 47329244 (+)
G514665 NA other downstream 300774 47306438 ~ 47320050 (+)
LOC118964881 LOC106585521 other downstream 508122 47425001 ~ 47519480 (+)
G515069 NA other downstream 944342 47950006 ~ 47952254 (+)

Expression


Co-expression Network