G514487


Basic Information

Item Value
gene id G514487
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47005841 ~ 47006197 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU583616
agtcagcagatggcggttTGCGACTTGAGGCAATGCTGCTAGTGTGACGTAAAATCTAGTGGACTTCTAGCTTctttcaacagcagcaacagttagtcagacacctcggtagcttgctagacaaaaTAGGCAAACCAATAAAGCTCTTTAGACGCTTTAGTGTATATTAGCCACTGTGTTTTAAACCCTTTTCTGTCGTCTTGTTAGTTATCCGATttgttgttattagtcagctagcagactggttaagttagcattagcctagctaacatccccgaccatgagttcactaagctactctcctcctgataaagaagaggaggttatcacagtaaaacaagaagtagagggtgaggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU583616 True 357 lncRNA 0.43 1 47005841 47006197

Neighbor

gene id symbol gene type direction distance location
LOC110526907 NA coding upstream 1489 46993596 ~ 47004352 (+)
LOC110526054 NA coding upstream 27713 46935543 ~ 46978128 (+)
LOC118964876 NA coding upstream 70564 46931084 ~ 46935277 (+)
rasgrf2b rasgrf2 coding upstream 105837 46722960 ~ 46900004 (+)
msh3 LOC106584876 coding upstream 296879 46574935 ~ 46708962 (+)
si:dkey-88e18.2 il12b coding downstream 104615 47110812 ~ 47119011 (+)
LOC110526052 hic2 coding downstream 144703 47150900 ~ 47217434 (+)
LOC118964877 NA coding downstream 389170 47395367 ~ 47398426 (+)
LOC110526909 LOC106585521 coding downstream 415044 47421241 ~ 47424219 (+)
LOC110526910 LOC106585521 coding downstream 444648 47450664 ~ 47494972 (+)
G514486 NA non-coding upstream 177 47005306 ~ 47005664 (+)
G514453 NA non-coding upstream 7176 46933793 ~ 46998665 (+)
G514459 NA non-coding upstream 32579 46968924 ~ 46973262 (+)
G514493 NA non-coding downstream 10413 47016610 ~ 47016813 (+)
G514494 NA non-coding downstream 10790 47016987 ~ 47017236 (+)
G514495 NA non-coding downstream 11113 47017310 ~ 47017547 (+)
G514496 NA non-coding downstream 12050 47018247 ~ 47018559 (+)
G514457 NA non-coding downstream 27676 47033873 ~ 47040194 (+)
G514464 NA other upstream 78127 46926842 ~ 46927714 (+)
G513745 NA other upstream 104718 46900561 ~ 46901123 (+)
G513501 NA other upstream 645256 46359956 ~ 46360585 (+)
LOC110526042 LOC106584891 other upstream 815549 46076084 ~ 46190292 (+)
G512912 NA other upstream 1369591 45635589 ~ 45636250 (+)
G514499 NA other downstream 16097 47022294 ~ 47023092 (+)
G514662 LOC106597055 other downstream 296986 47303183 ~ 47329244 (+)
G514665 NA other downstream 300241 47306438 ~ 47320050 (+)
LOC118964881 LOC106585521 other downstream 507589 47425001 ~ 47519480 (+)
G515069 NA other downstream 943809 47950006 ~ 47952254 (+)

Expression


Co-expression Network