G514457


Basic Information

Item Value
gene id G514457
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47033873 ~ 47040194 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU583585
ccacaggttataaacggaaaatgacgtcagcgttttctaaatgttccgtctcttcttgacactggtagaaaggctctatagatctcaagccttccctcctcgcctagagccaaggtcagtcagtgtagataagcattctagacagtctggagatagtccGTCCCTGCCATCTGGAGTTCATTTATTTGTACCAAGGAATAGGCCATCATTGTTCTAAACTCTTGACTACATTATATTCAATActgggagcaagagagaaaattcatacatgtacagtaacataACAGTATTCGGATTattcagtcctgattgaaatgtatacagaattagtcatcattgataaaaattcccttaacatatCCACCCTTTGATTAAATATTATACATTCAATCACACATTGTAGTTATATTGTAATATTAAAAAGCCTATTTTTATTAGAGATATTTCTTGTcatcaaaacatcacctaaacataaccccatACTTGCATTCGCCATAACCGTTTCTCAGGCCTACATCAGAATCATAACTCTTCTTATCAGGATTTTCGTTACAATCTTCATAAAAAAACAGTCTAATATTGAGATGGGATGCAACCTAGCCTCCCTAAACATCAAAAATGGTCTCTTGAAACATAAATTCCCCGCAACTGAAGGATCCAGATTCGTCCACTTGTCCTGTAGACATACAATCAGCACTCCGCGGGTCTGAACCTGGAATCCCCTGGTACCTCACCATCTATTGTCATCGATTTCTCCAGAGTCCTGGAAATAGGGTCTCATATACAGGGAATTAGACAACAGCCCCATAAAACTATACAGTCACACAGGTGAATGTAGCCCATAATACAGTGATCATAATATTTTTTCCCATTTTCTGAACATACTATCAAACCCAATTAGTCAGAGAAGTATCCACCCAAGAGTTTTCTGCCAAACCGTGAGCCAGGGTGGTCAAACCAGCTGAGGCTTCGGGCACTGATTCGTCCGGAGCTGTGTTATTTGGGATGTAAGCACAAACATGGTCCCGATAATCACGCATACTTCTCCCTTTTCAGCCATTAACATATCTAATGCAATTCTATTCTGCCAAGCCATCCGGCTGGTTGCTTCAGTCTGTTCTGCAAAACCTTTAATAGCATCTCTGGTATAATTGTTAAAGCGCTgttgattataataaatataattaatCCAGTCCTCGTCCGTGTAACCCCAATGTTATCAATGTATACTTTGTCAATAAGAGACCCGGATGGAGTAGCTCTTTTCTCCCATCTGGCTATACTTCATGTCTTGGTGTTGAATGAGTGTGAAAGGCATTCTCAAATGTACAATGGGGCATAATCCTGTCCAATCTGTCGGTAAAACCTCGCCCTGACATCATTTCCCAAGAGTACTGTACCGGGCCAAACGGTAATAATCTCCTCCGGTCACTGTAAAGGGAGGAAGTCTTGATTTAAGGGGAACTTGGGGATATAAATAGTGCAAATCAATACAACTGTCATTATCTGGCATTCCTGCTTTCGTGAACAGCTTTACCATACCGGCCTAAACTCCTCTACCCAGAACCATACTAGGGTGTCGACCAAGACCTGGTCATATCCATACCACAACCCTAGATCCTCCTTCATTTCTGTTTAAAGGGTTAGGCGTATCTTTATGcaatacatccctctctcctgattACAATCAAAAACTCTCACCTTCCCTATACTCTACCTTCTTCCATACTGGGTGAGTGGATTcatatagccctctctctccaAATGAGCTATGACCTGTGTCCACGATCAATATGGGAACCTGCACCGATATATGCCATAATGGCTCAGAGTCCTAGACTGCCATGTAGTTAGAGACTCCATTTTGGTCTACATAAAACTCCATTGAGAGATCCTTCCCAACTTCCTGTCTACCCAGATCTAGGGATCTCTTATGCTTATTTTGGAACAAAATCCTCATCGTCTAAACCATGGGTCAAATTACCACTCTCCGCATACTCAAGTAGGACGTGCTGTATCAGGAATATGTCACCCACGATAAGACAGCTCAGACGAACAGCTTCCATGTgaagccccaccctctccccgAGAACACATCACTTAGCAAGAGCCAGACACACCTTCACTTCTAAGAACAAAAACAGGGATGAAAAGACAGGAAGGATTTTcttcattcgagagatggcccccggaattctgttaattccagttctcctctcgaacactgtttattgttcgacagtgtcaCAGTGTCTTACCCTCCCGCCGTGCGATATGAATACaggtagctctttcagctagctgtcaccaggagtccttggtatggtccccccaacaagcctctgggactagattgagtgacttcacctgtagttcacctgtaatgcataaaatcctggacatacaggcttGGTTAACAAACATTTTCTCCTATGTTTTATCTGATTATATCTttaacttacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttctttttgtaaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccccttaagctaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgaaattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttcttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccaaccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggctcaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggcagcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttctccacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattTTCTTCCTACACTTTACAAGCCCTTTCCTTCAGGGATCCTCAGTATCCTATCTGACAATAACATGAATTTAATATATGTTGCATAGTGTGGAATACCTTATCTACAGTAATTTATCACCCCTATTTATTCTCAATGATAAATAACTATTTTCTGTTGTAATATCAAATCCATTATAGCCAATTCAAAAACTTCACAGCTAATATTGTAAATCAGCTTCAGTGATTCAAACAATAATTCTAAACCCCAAACTAACACTCCATTATAACTAATTTACCTTAAAATTAGTAACCCAACTGACCACAATTCAT

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU583585 True 4164 lncRNA 0.41 4 47033873 47040194

Neighbor

gene id symbol gene type direction distance location
LOC110526907 NA coding upstream 29521 46993596 ~ 47004352 (+)
LOC110526054 NA coding upstream 55745 46935543 ~ 46978128 (+)
LOC118964876 NA coding upstream 98596 46931084 ~ 46935277 (+)
rasgrf2b rasgrf2 coding upstream 133869 46722960 ~ 46900004 (+)
msh3 LOC106584876 coding upstream 324911 46574935 ~ 46708962 (+)
si:dkey-88e18.2 il12b coding downstream 70618 47110812 ~ 47119011 (+)
LOC110526052 hic2 coding downstream 110706 47150900 ~ 47217434 (+)
LOC118964877 NA coding downstream 355173 47395367 ~ 47398426 (+)
LOC110526909 LOC106585521 coding downstream 381047 47421241 ~ 47424219 (+)
LOC110526910 LOC106585521 coding downstream 410651 47450664 ~ 47494972 (+)
G514496 NA non-coding upstream 15314 47018247 ~ 47018559 (+)
G514495 NA non-coding upstream 16326 47017310 ~ 47017547 (+)
G514494 NA non-coding upstream 16637 47016987 ~ 47017236 (+)
G514493 NA non-coding upstream 17060 47016610 ~ 47016813 (+)
G514487 NA non-coding upstream 27676 47005841 ~ 47006197 (+)
G514461 NA non-coding downstream 794 47040988 ~ 47041441 (+)
G514530 NA non-coding downstream 38479 47078673 ~ 47078880 (+)
G514541 NA non-coding downstream 63158 47103352 ~ 47103562 (+)
G514545 NA non-coding downstream 68039 47108233 ~ 47181067 (+)
G514614 NA non-coding downstream 197298 47237492 ~ 47237777 (+)
G514499 NA other upstream 10781 47022294 ~ 47023092 (+)
G514464 NA other upstream 106159 46926842 ~ 46927714 (+)
G513745 NA other upstream 132750 46900561 ~ 46901123 (+)
G513501 NA other upstream 673288 46359956 ~ 46360585 (+)
LOC110526042 LOC106584891 other upstream 843581 46076084 ~ 46190292 (+)
G514662 LOC106597055 other downstream 262989 47303183 ~ 47329244 (+)
G514665 NA other downstream 266244 47306438 ~ 47320050 (+)
LOC118964881 LOC106585521 other downstream 473592 47425001 ~ 47519480 (+)
G515069 NA other downstream 909812 47950006 ~ 47952254 (+)
G515189 LOC100135962 other downstream 1511425 48532377 ~ 48587888 (+)

Expression


Co-expression Network