G514545


Basic Information

Item Value
gene id G514545
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47108233 ~ 47181067 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU583677
gctgttagtgtcttaacctttctgatctccccatcccggatccgggatcgtgaatacagactcaagctcattaccataacgcaacgttaactattcatgaaaatcgcaaatgaaattaaataaatatgctagctctcaagcttagccttttgttaacaacactgtcatctcagattttcaaaatatgcttctcaaccattgcaaaacaagcatttgtgtaacagtattgatggctaacgtagcatttagcattagcattcagctggcaacatttacacaaaaaaacagaaaagcattcaaataaaatcctttacctttgaagaacttcagatgttttcaatgaggagactctcagatagcaaatgttcagtttttcctgaaagattatttgtttaggacaaatcgctccgttttctgcgtcacgtttagctatgaaaaaacccctgtatccaggattgtgtaaatctatcagcaagctcattagcataacacaacgttaactatttatgaaaatcgcaaatgaaatgaaataaatatgccatctctcaagcttagccttttgtaaacaacactgtcatctcagattttcaaaatatgcttctcaaccataggaaaacaatcatttgtgtaaaagtagctagctagcgttagcatttagcgttagcatttagcattagcattagcgttagcatccagcacgcaacattaacaaaaacataaaagccttcaaataaaatcatttacctttgaagaacttctgatgttttcaatgaggatactctcagttagatagcagatgctcagtttttccaaaaagattccttgtgtattagaaatagctccgttttatacatcacatttggct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU583677 True 865 lncRNA 0.35 2 47108233 47181067

Neighbor

gene id symbol gene type direction distance location
LOC110526907 NA coding upstream 103881 46993596 ~ 47004352 (+)
LOC110526054 NA coding upstream 130105 46935543 ~ 46978128 (+)
LOC118964876 NA coding upstream 172956 46931084 ~ 46935277 (+)
rasgrf2b rasgrf2 coding upstream 208229 46722960 ~ 46900004 (+)
msh3 LOC106584876 coding upstream 399271 46574935 ~ 46708962 (+)
LOC118964877 NA coding downstream 214300 47395367 ~ 47398426 (+)
LOC110526909 LOC106585521 coding downstream 240174 47421241 ~ 47424219 (+)
LOC110526910 LOC106585521 coding downstream 269778 47450664 ~ 47494972 (+)
LOC118964881 LOC106585521 coding downstream 332565 47425001 ~ 47519480 (+)
LOC118964880 LOC106585521 coding downstream 358254 47539321 ~ 47543002 (+)
G514541 NA non-coding upstream 4671 47103352 ~ 47103562 (+)
G514530 NA non-coding upstream 29353 47078673 ~ 47078880 (+)
G514461 NA non-coding upstream 66792 47040988 ~ 47041441 (+)
G514457 NA non-coding upstream 68039 47033873 ~ 47040194 (+)
G514496 NA non-coding upstream 89674 47018247 ~ 47018559 (+)
G514614 NA non-coding downstream 56425 47237492 ~ 47237777 (+)
G514628 NA non-coding downstream 74614 47255681 ~ 47256160 (+)
G514639 NA non-coding downstream 86552 47267619 ~ 47267921 (+)
G514641 NA non-coding downstream 87976 47269043 ~ 47269331 (+)
G514632 NA non-coding downstream 100433 47281500 ~ 47284426 (+)
G514499 NA other upstream 85141 47022294 ~ 47023092 (+)
G514464 NA other upstream 180519 46926842 ~ 46927714 (+)
G513745 NA other upstream 207110 46900561 ~ 46901123 (+)
G513501 NA other upstream 747648 46359956 ~ 46360585 (+)
LOC110526042 LOC106584891 other upstream 917941 46076084 ~ 46190292 (+)
G514662 LOC106597055 other downstream 122116 47303183 ~ 47329244 (+)
G514665 NA other downstream 125371 47306438 ~ 47320050 (+)
G515069 NA other downstream 768939 47950006 ~ 47952254 (+)
G515189 LOC100135962 other downstream 1370552 48532377 ~ 48587888 (+)

Expression


Co-expression Network