G514632


Basic Information

Item Value
gene id G514632
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47281500 ~ 47284426 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU583772
CCAGGACTTTCAGAGGCAGAGGATCTCCCTTTCGGCTTTTGCTGACCACAACTGCATgtggtgcttgtacaggcagaccatctatgggaggaaggatgtcaccGTTGtgcagcagctgaaacctggtcccgacTGAGTCCGACAGGTCCTTGACgacaacaacaccaggctccaaaacatcaaagctgtaaaacaggaaataacaaaAACAAATTGAGAAGAGGTTACAACCTTGCACAACATCAATTCACACcccaagtttaaaaaataaatacaaatctcatacaatgcaatgaagatgatattcacctgaagtgctggtactggttgatctgtggcagcggcctgaagtacggagtcaggtgttgttgccagccatagctttccaccagcaccgtaccatcctccagtccaaccagctgtgggatgttgacccctgtTACAGTGCTGTCCATCACAAAaccagcaatctcagacaaagtgACAATCATGTTGGAAGTCAATGAAATAATCAAAACGTGTTGTTTATGCTCCACATACTAAGTGTTGTCATCGATTCCTTGTAGAGACGCCACACTGCTGCTTTTGTCACATGGGATGACAGCAGCTTTCCACCAAAGTGTTTGTGTCCTGAGTGGCGTCCTGGTAATACTATTGCATTATCCTCTGCATAGTTGTTGATGAAGTTCACCACTCTCTGCTGGTCCTCATGCTTTAGGAGTAACCTGtgcttgcttgggccagctctctttttgatgggaggcattagaccattctccttgaaTGACTGGTGtaggagagtcaggtgtgttctgctgatgctgaaagacaaattccagacaCAAATATTTCAGCATTATTATACAAAAGATAGCCGTAATCACCGTCAGACACActtggctaacttgatgggttgtcagctagctagctaatagtaagctttaacttggggtcttttgtttagacatgtagctagctagctagctaaaaaatgaaccataatcccaatccatagagtactagcaatacaaaccgattgtcatagtTAGTTAaccaaagttagctagctaacattaggctataactagcaatgtgaAATTGCAGGATGACATTACTACACACAGATCAtaaacgtaatgttagctagcgagccaaccATCTAACTTCAGCTCGTTAGCCAACAGTAAGCTTTACTTGGGGTCTATTGTTTAGACATtccagctagcacagtggatctgggctGATTCCGGCTGAGAGTTGGGGCACTCGGCTGAGAGTTAGATTCGGCTGATGTCATGTGGCCCAAGTCTTaggcagtattacttatggctaaAATGCAGGGATTGAGCTCGGGCTGATTCCGGtgagagttatctggcccaaatgtattacttggggctcgggcctattccggtgtgagttatctgtCCCAACTGTTttacttggggctcgggccgATTAAAGCTACTttctggcagatgattacacgggctgctttatataattaacatttcattatttatttattattccaTATTTTCTCAatgtttctgtgatcaaaaaatacaattaacatttaaattaaattcttTAACCTGATTAAGTAGtgtagtattttgatactttgtgcaaggcaattgataagCATTAAACACTTTGTGGAGTGGCGCTGCGGTCCAAGACACTAAATCGCACTGCGTTACTTCAGATGCTGGTTCGATACCCATGCCAGCAGCGAccgtgtgtcacgacttccatcGAAGGTGGCTCTTCTCCCTGTTCGCTCGGCGGTCGtcatcgccggtctactagctgcaaCCGATTattttttccttttcttttggttatgtctgttttgtgtttcacctGGTTTCATTTTGGTTAATTAGGGGGGATACTTCATAGACATTTCCCTAGGGTTTTTTTTGTGCAGGATTGTTTTCGTTTGAACTATCAGTGAGTTTGGGTTTCGTTTTATTAGCTCATGTTTTACAGGTGTTTTTCCCTGGACTGTGTCCTGTTGTTTTTTGAGCTAGTTTAATAAAACACCCTTT

Function

NR:

description
hypothetical protein cypCar_00043689, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU583772 True 2054 lncRNA 0.43 2 47281500 47284426

Neighbor

gene id symbol gene type direction distance location
LOC110526052 hic2 coding upstream 64066 47150900 ~ 47217434 (+)
si:dkey-88e18.2 il12b coding upstream 162489 47110812 ~ 47119011 (+)
LOC110526907 NA coding upstream 277148 46993596 ~ 47004352 (+)
LOC110526054 NA coding upstream 303372 46935543 ~ 46978128 (+)
LOC118964876 NA coding upstream 346223 46931084 ~ 46935277 (+)
LOC118964877 NA coding downstream 110941 47395367 ~ 47398426 (+)
LOC110526909 LOC106585521 coding downstream 136815 47421241 ~ 47424219 (+)
LOC110526910 LOC106585521 coding downstream 166419 47450664 ~ 47494972 (+)
LOC118964881 LOC106585521 coding downstream 229206 47425001 ~ 47519480 (+)
LOC118964880 LOC106585521 coding downstream 254895 47539321 ~ 47543002 (+)
G514641 NA non-coding upstream 12169 47269043 ~ 47269331 (+)
G514639 NA non-coding upstream 13579 47267619 ~ 47267921 (+)
G514628 NA non-coding upstream 25340 47255681 ~ 47256160 (+)
G514614 NA non-coding upstream 43723 47237492 ~ 47237777 (+)
G514545 NA non-coding upstream 100433 47108233 ~ 47181067 (+)
G514656 NA non-coding downstream 10449 47294875 ~ 47295076 (+)
G514675 NA non-coding downstream 46001 47330427 ~ 47339327 (+)
G514684 NA non-coding downstream 63035 47347461 ~ 47352548 (+)
G514685 NA non-coding downstream 63211 47347637 ~ 47353169 (+)
G514709 NA non-coding downstream 137877 47422303 ~ 47422634 (+)
G514499 NA other upstream 258408 47022294 ~ 47023092 (+)
G514464 NA other upstream 353786 46926842 ~ 46927714 (+)
G513745 NA other upstream 380377 46900561 ~ 46901123 (+)
G513501 NA other upstream 920915 46359956 ~ 46360585 (+)
LOC110526042 LOC106584891 other upstream 1091208 46076084 ~ 46190292 (+)
G514662 LOC106597055 other downstream 18757 47303183 ~ 47329244 (+)
G514665 NA other downstream 22012 47306438 ~ 47320050 (+)
G515069 NA other downstream 665580 47950006 ~ 47952254 (+)
G515189 LOC100135962 other downstream 1267193 48532377 ~ 48587888 (+)

Expression


Co-expression Network