G514685


Basic Information

Item Value
gene id G514685
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47347637 ~ 47353169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU583833
GGAACACTTCCATCCACTTGGAATGGACATCGACGACAACAAGGAAATGTTGCTTGTCAATTTCGGCGTAATCCACATGGATGCGTTCCCAAGGTGTAGCAGCCCAGGACCATGGATGAAGAggtgcagcagcaggcttgtTGCGAACAGCTTCACAAGGTGAGCAGTGGCCTACATGCTGTTGAATGTCCTGATCCAGTCCAGGCCACCACAGATAACTGCGAGCGAGTGCTTTCATTCGAGTGATCCCTGGATGTCCCTCATGCAGGTCAGATAGCAGTCTCCTCTGGAATTTGTGAGGTACCACCACCCTTGATCCCCACAGAACACACCCTTGATCAGTGGACAACTGGTCTTTCTTGTCGATGAATGGACGAAGGTTATCGTAATTTACAAAGGTTGGCCAACCGCCTAATGTTAAGTCCAAGACTTTGGAAAGCACTGGGTCTTTCCTTGTTTCCTCTGCTATGTCAGAAGCAGATATGGGCAGTTCATCAATGAGAGAGATCTGGAAGACTGCTCTATCATCTTCACTGTCGGAGTCACTATTGCATGGTAGTCTTGATAGTGCATCGGCATTTGCGTGATCACTGGATCGTCTGTACTCAATCTCGTAGTCGTAGGCTAACAATATCAGAGCCCAACGTTGCATTCGA
>TU583834
GGAACACTTCCATCCACTTGGAATGGACATCGACGACAACAAGGAAATGTTGCTTGTCAATTTCGGCGTAATCCACATGGATGCGTTCCCAAGGTGTAGCAGCCCAGGACCATGGATGAAGAggtgcagcagcaggcttgtTGCGAACAGCTTCACAAGGTGAGCAGTGGCCTACATGCTGTTGAATGTCCTGATCCAGTCCAGGCCACCACAGATAACTGCGAGCGAGTGCTTTCATTCGAGTGATCCCTGGATGTCCCTCATGCAGGTCAGATAGCAGTCTCCTCTGGAATTTGTGAGGTACCACCACCCTTGATCCCCACAGAACACACCCTTGATCAGTGGACAACTGGTCTTTCTTGTCGATGAATGGACGAAGGTTATCGTAATTTACAAAGGTTGGCCAACCGCCTAATGTTAAGTCCAAGACTTTGGAAAGCACTGGGTCTTTCCTTGTTTCCTCTGCTATGTCAGAAGCAGATATGGGCAGTTCATCAATGAGAGAGATCTGGAAGACTGCTCTATCATCTTCACTGTCGGAGTCACTATTGCATGGTAGTCTTGATAGTGCATCGGCATTTGCGTGATCACTGGATCGTCTGTACTCAATCTCGTAGTCGTAGGCTAACAATATCAGAGCCCAACGTTGCATTCGA

Function

NR:

description
PREDICTED: uncharacterized protein K02A2.6-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU583833 False 656 lncRNA 0.49 2 47347637 47353169
TU583834 True 656 lncRNA 0.49 2 47347637 47353169

Neighbor

gene id symbol gene type direction distance location
LOC110526052 hic2 coding upstream 130203 47150900 ~ 47217434 (+)
si:dkey-88e18.2 il12b coding upstream 228626 47110812 ~ 47119011 (+)
LOC110526907 NA coding upstream 343285 46993596 ~ 47004352 (+)
LOC110526054 NA coding upstream 369509 46935543 ~ 46978128 (+)
LOC118964876 NA coding upstream 412360 46931084 ~ 46935277 (+)
LOC118964877 NA coding downstream 42198 47395367 ~ 47398426 (+)
LOC110526909 LOC106585521 coding downstream 68072 47421241 ~ 47424219 (+)
LOC110526910 LOC106585521 coding downstream 97676 47450664 ~ 47494972 (+)
LOC118964881 LOC106585521 coding downstream 160463 47425001 ~ 47519480 (+)
LOC118964880 LOC106585521 coding downstream 186152 47539321 ~ 47543002 (+)
G514675 NA non-coding upstream 8310 47330427 ~ 47339327 (+)
G514656 NA non-coding upstream 52561 47294875 ~ 47295076 (+)
G514632 NA non-coding upstream 63211 47281500 ~ 47284426 (+)
G514641 NA non-coding upstream 78306 47269043 ~ 47269331 (+)
G514639 NA non-coding upstream 79716 47267619 ~ 47267921 (+)
G514709 NA non-coding downstream 69134 47422303 ~ 47422634 (+)
G514718 NA non-coding downstream 84169 47437338 ~ 47437660 (+)
G514732 LOC106585521 non-coding downstream 138319 47491488 ~ 47492043 (+)
G514662 LOC106597055 other upstream 18393 47303183 ~ 47329244 (+)
G514665 NA other upstream 27587 47306438 ~ 47320050 (+)
G514499 NA other upstream 324545 47022294 ~ 47023092 (+)
G514464 NA other upstream 419923 46926842 ~ 46927714 (+)
G513745 NA other upstream 446514 46900561 ~ 46901123 (+)
G515069 NA other downstream 596837 47950006 ~ 47952254 (+)
G515189 LOC100135962 other downstream 1198450 48532377 ~ 48587888 (+)
LOC110526072 LOC106587002 other downstream 1595448 48948617 ~ 49037542 (+)
edf1 edf1 other downstream 1830704 49183291 ~ 49187334 (+)

Expression


Co-expression Network